Greetings,
I run into a 'std::bad_alloc()' error when processing a 500MB BAM file with cufflinks on a 8BG machine. The exact error message is
I saw many posts about this 'bad_alloc' error, which seams to be related to memory problems. For example,
However none of those posts received an answer. Does anybody have an idea why this error occurs and how to fix it? I tried to run the same process on a Mac with 4 cores and 8GB of RAM, and a Linux 64bits with 4 cores and 12GB of RAM, with the same result.
Best,
Aurelien
I run into a 'std::bad_alloc()' error when processing a 500MB BAM file with cufflinks on a 8BG machine. The exact error message is
Code:
. . . > Processed 17748 loci. [*************************] 100% > Map Properties: > Total Map Mass: 14607725.69 > Read Type: 54bp single-end > Fragment Length Distribution: Gaussian (default) > Estimated Mean: 205.82 > Estimated Std Dev: 73.30 [16:12:46] Assembling transcripts and estimating abundances. > Processing Locus EG_1:2534992-2535117 [************************ ] 99%terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc
However none of those posts received an answer. Does anybody have an idea why this error occurs and how to fix it? I tried to run the same process on a Mac with 4 cores and 8GB of RAM, and a Linux 64bits with 4 cores and 12GB of RAM, with the same result.
Best,
Aurelien
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