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  • Making exonCountSet object using DEXSeq in R

    The DEXSeq vignette states that a user can create and exonCountSet using DEXSeq in R only. Can anyone explain or point to a reference that explains how to do this? Thanks!

  • #2
    Use the python scripts that come with DEXSeq (they run htseq-count) and then just read.HTSeqCounts(...) in R.

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