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  • papori
    Senior Member
    • Dec 2010
    • 181
    #1

    looking for isoforms

    Hey all,
    i did de novo assembly for transcriptome . Now i want to look for isoforms .
    do anyone familiar with software that doing it?

    what are the automatics analysis tools for de novo assembly?
    where to look for?

    thanks!
    Tags: None
  • tir_al
    Member
    • Sep 2010
    • 22
    #2
    You could try the "Trinity pipeline". It does transcriptome reconstruction without the reference genome.

    303 See Other
    http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.1883.html


    Best regards.

    Comment

    • papori
      Senior Member
      • Dec 2010
      • 181
      #3
      i used Trinity for the assembly...

      Comment

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