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Old 09-24-2011, 10:56 PM   #1
stanford_genome_tech
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Default Targeted resequencing - open source

Hi all,

Stanford Genome Technology has published a 2nd generation "open source" capture technology using in solution oligonucleotides.

We have an in silico design covering the CCDS genes (most of the exome) release and will have one covering the majority of the genome out soon (under review). You can download oligo sequences and create your own capture assays.

http://oligoexome.stanford.edu

http://www.plosone.org/article/info%...l.pone.0021088

More completely new third generation targeting technologies coming soon in a Nature journal. Be on the look out for it shortly.

SGTC sequencing techies
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Old 09-27-2011, 09:19 AM   #2
ECO
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Very cool paper. Making no friends at Agilent.

Is your "TargetedOligoDesign" program available for designing oligos for different genomes/targets? I can't seem to find it.

Also, your zip file download is broken.
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Old 09-27-2011, 04:22 PM   #3
stanford_genome_tech
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The zip file download is fixed. The oligo design program isn't "polished" enough for release, but we are releasing an in-silico set that covers the majority of the human genome.
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Old 09-27-2011, 04:27 PM   #4
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Excellent, thanks!
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cancer genomes, gene sequencing, mutations, targeted resequencing, targeting

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