genotype info from MAQ - SEQanswers

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johnsequence

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Join Date: Jan 2010

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genotype info from MAQ

10-28-2011, 06:43 PM

Hello,

How to derive the genotype info (e.g. A/B) directly from MAQ alignment? It should call the genotype before SNP calling, but what I get is the SNP calling and not clear which file to get the genotype info for the final SNPs. Thanks.

John
Tags: genotype maq

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