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Old 01-11-2012, 09:07 AM   #1
dmacmillan
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Default CNS File?

I want to used cnvHMM but it requires a cns file. I am not sure what exactly a cns file is so if anyone has some knowledge, it would be appreciated.

Last edited by dmacmillan; 01-11-2012 at 09:26 AM.
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Old 01-23-2012, 07:42 AM   #2
pd
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Default readme fiel not clear

Hi

The cnvNMM READMe file is not clear. I could not figure out the format or type of cnsfile. Some idea?
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Old 01-24-2012, 03:54 AM   #3
ganygan25
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I think cns file is the consensus read depth file.
Just came across samtools mpileup for Variant and SNP calls..

http://samtools.sourceforge.net/mpileup.shtml
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Old 01-24-2012, 04:00 AM   #4
pd
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thank you ganygan25
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Old 04-16-2012, 05:59 AM   #5
mjohnpayne
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Hi,

I'm also trying to get this to work. Did samtools mpileup work? If so what did you try?

Cheers
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