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01-11-2012, 08:07 AM
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#1 |
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Member
Location: British Columbia Join Date: Jan 2012
Posts: 46
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CNS File?
I want to used cnvHMM but it requires a cns file. I am not sure what exactly a cns file is so if anyone has some knowledge, it would be appreciated.
Last edited by dmacmillan; 01-11-2012 at 08:26 AM. |
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01-23-2012, 06:42 AM
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#2 |
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Member
Location: Leuven, Belgium Join Date: Jan 2010
Posts: 17
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readme fiel not clear
Hi
The cnvNMM READMe file is not clear. I could not figure out the format or type of cnsfile. Some idea? |
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01-24-2012, 02:54 AM
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#3 |
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Junior Member
Location: UK Join Date: Dec 2011
Posts: 9
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I think cns file is the consensus read depth file.
Just came across samtools mpileup for Variant and SNP calls.. http://samtools.sourceforge.net/mpileup.shtml |
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01-24-2012, 03:00 AM
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#4 |
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Member
Location: Leuven, Belgium Join Date: Jan 2010
Posts: 17
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thank you ganygan25
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04-16-2012, 04:59 AM
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#5 |
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Junior Member
Location: Melbourne Join Date: Feb 2012
Posts: 1
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Hi,
I'm also trying to get this to work. Did samtools mpileup work? If so what did you try? Cheers |
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