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02-15-2012, 03:44 AM
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#1 |
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Junior Member
Location: Langenboom, Netherlands Join Date: Oct 2009
Posts: 3
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GFF 2 genbank converter
Is there an easy way to convert gff + fasta files to genbank files?
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02-16-2012, 03:48 AM
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#2 |
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Peter (Biopython etc)
Location: Dundee, Scotland, UK Join Date: Jul 2009
Posts: 1,171
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No, just various levels of hassle. GFF (even GFF3) is very broad and can include all sorts of things which don't simple map onto the relatively narrow and proscribed GenBank format.
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02-16-2012, 12:14 PM
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#3 |
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Junior Member
Location: Langenboom, Netherlands Join Date: Oct 2009
Posts: 3
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But it should be possible for a GFF file holding only CDS regions isn't it?
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02-16-2012, 01:33 PM
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#4 |
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Peter (Biopython etc)
Location: Dundee, Scotland, UK Join Date: Jul 2009
Posts: 1,171
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If your GFF file has CDS regions then it is certainly possible. I think there are some BioPerl based scripts that can do this...
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