I am having problems with my standalone blast databases.
I have made them in the past and they have worked however now when I try to blastn against them i get a warning such that:
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
etc.
When I look at the out put of creating the databast it has been made correctly as far as I can tell:
New DB name: BlastLib/ATGTCA1db
New DB title: ATGTCA1.fasta
Sequence type: Nucleotide
Keep Linkouts: T
Keep MBits: T
Maximum file size: 1073741824B
Adding sequences from FASTA; added 40083681 sequences in 6226.41 seconds.
and the code I'm using to blast againt the file is:
blastall -p blastn -i LuciMatch -d /iob_home/dwhlab/behrimg/SarahHiSeq/ATGTCA1/BlastLib/ATGTCA1db -o ./BlastResults/ATG_Luc_Elong
I dont really know what is going wrong. Any help would be appreciated I'm getting very frustrated.
I have made them in the past and they have worked however now when I try to blastn against them i get a warning such that:
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.00.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.01.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
[blastall] WARNING: Unable to open ATGTCA1db.02.nin
etc.
When I look at the out put of creating the databast it has been made correctly as far as I can tell:
New DB name: BlastLib/ATGTCA1db
New DB title: ATGTCA1.fasta
Sequence type: Nucleotide
Keep Linkouts: T
Keep MBits: T
Maximum file size: 1073741824B
Adding sequences from FASTA; added 40083681 sequences in 6226.41 seconds.
and the code I'm using to blast againt the file is:
blastall -p blastn -i LuciMatch -d /iob_home/dwhlab/behrimg/SarahHiSeq/ATGTCA1/BlastLib/ATGTCA1db -o ./BlastResults/ATG_Luc_Elong
I dont really know what is going wrong. Any help would be appreciated I'm getting very frustrated.
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