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  • tmacme
    Junior Member
    • Oct 2011
    • 3
    #1

    summarize_annovar.pl error message

    Any one knew how to deal with this problem ?
    Thanks!
    $ perl summarize_annovar.pl -buildver hg19 653_snps.avinput -outfile 653_snps ./humandb
    NOTICE: the --ver1000g argument is set as '1000g2010nov' by default

    NOTICE: Running step 1 with system command <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb>
    Error running system command: <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb>
    Tags: annovar annotation, summazize_annovar.pl
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