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  • Triticum
    Member
    • Sep 2009
    • 12

    cDNA normalization

    hi!
    is it possible to do a cDNA-normalization prior to the sequencing with solid? the solid-protocol does not mention normalization, but i think it would be very useful for me. i´m not sure if the adaptores are disturbing the normalization-step and if this procedure could influence the sequencing-quality maybe because of some reagents.
    (i want to compare sequencing-runs and discover transcripts that are only present in one sample and not in the other. so i do not care about counting transcripts)

    thanks. triticum.

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    I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

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