Annovar -filtering

AD13

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Join Date: Oct 2013

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#1

Annovar -filtering

10-08-2013, 10:09 AM

Hi All,

I want to use ANNOVAR to run variant reduction, in order to filter out previously identified SNP's in databases such as 1000G, dbSNP, esp6500.
However I am not really sure of commands to use.

Also, is there somewhere I can go and read to figure out what other filters to use?

Could someone please help me out?
Thank-you!
Tags: annovar, snp
sdvie

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Join Date: Jul 2010

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#2

10-09-2013, 02:32 AM

Here is a description.
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AD13

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Join Date: Oct 2013

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#3

10-09-2013, 07:47 AM

Hi,
Thank-you for the reply. I looked at the link, that kind of gives an idea of how to pick those SNP's that have been identified already.
I am looking to do just the opposite.
Could you point me in the right direction...
Thank-you!
Amrita
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