adapter remove

[yueli]

Hi,

I have a file just as follow:

3' Adapter



5'

-------------------- -------------------- --------- (-)

AMPCTGTAGGCACCATCAATdideoxyC---------- 3'



3'

-------------------- -------------------- --------- (-) --------------------

----------------- 5'



5' Adapter



5'

-------------------- ---GUUCAGAGUUCUACAGU CCGACGAUC (-)

-------------------------------------- 3'



3'

-------------------- -------------------- --------- (-) --------------------

----------------- 5'

I just want to know what is the adapter. The 3' adapter I think is AMPCTGTAGGCACCATCAATdideoxyC, but how about the 5' adaper?

Is it GUUCAGAGUUCUACAGU or CCGACGAUC or just combine them GUUCAGAGUUCUACAGUCCGACGAUC? I got confusing.

Thanks,