tophat/bowtie compatibility

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skingan

Member

Join Date: Feb 2010

Posts: 17
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#1

tophat/bowtie compatibility

02-26-2014, 11:05 AM

Hi nerds,
I am using the Tuxedo suite for an RNAseq dataset. Apparently the latest versions of bowtie2 and tophat are incompatible. Does anyone know what versions of the programs play nice?
Thank you,
Sarah
Tags: bowtie, rnaseq, tophat
westerman

Rick Westerman

Join Date: Jun 2008

Posts: 1104
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#2

02-26-2014, 11:38 AM

The previous version of bowtie2. 2.1.0. Just use that one with Tophat.
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