Im trying to get a GTF with rRNA and tRNA for mm10, as input for --mask-file for Cufflinks.
I chose the rmask table for mm10, filter for "repClass," type rRNA "OR" repClass = "tRNA"
I get this error:
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Can't start query:
select genoStart,genoEnd,repName,swScore,strand from rmsk where genoName='chr1' and (rmsk.repClass = 'tRNA' OR (rRNA))
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---------------------------------------------------------------------------
mySQL error 1054: Unknown column 'rRNA' in 'where clause' (profile=<noProfile>, host=mysqlrr, db=mm10)
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Any help?
I chose the rmask table for mm10, filter for "repClass," type rRNA "OR" repClass = "tRNA"
I get this error:
---------------------------------------------------------------------------
Can't start query:
select genoStart,genoEnd,repName,swScore,strand from rmsk where genoName='chr1' and (rmsk.repClass = 'tRNA' OR (rRNA))
---------------------------------------------------------------------------
---------------------------------------------------------------------------
mySQL error 1054: Unknown column 'rRNA' in 'where clause' (profile=<noProfile>, host=mysqlrr, db=mm10)
---------------------------------------------------------------------------
Any help?
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