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  • DESeq2 for R-version 3.1?

    Hello,

    I've updated my version of R today from 3.0.2 to 3.1. Now when I'm trying to install DESeq2, I get a warning message like this:

    Warning in install.packages :
    package ‘DESeq2’ is not available (for R version 3.1.0 RC)

    A similar problem appears with package TCC. Can I do something about that or do I have to wait? There's also a problem with installing lattice and spatial, because these directories are not writable now (I'm using Ubuntu)

    Thanks
    Beth

  • #2
    DESeq2 is a Bioconductor package
    The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.


    (ok I see you already knew that...)

    yes I believe you have to wait a week for the next release of Bioc.

    there is information here on the timing of the Bioc 2.14 release with R 3.1

    The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
    Last edited by Michael Love; 04-05-2014, 05:46 AM.

    Comment


    • #3
      Thank you! I think I will have to wait a few days then, but no problem ^^

      Comment

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