Go Back   SEQanswers > Sequencing Technologies/Companies > Vendor Forum

Similar Threads
Thread Thread Starter Forum Replies Last Post
Data Analysis for Genomics, free HarvardX course, starts April 7 Michael Love Bioinformatics 8 12-16-2014 06:27 AM
reference-free SNP discovery Marius De novo discovery 5 03-30-2011 12:23 PM
PubMed: Reference-free validation of short read data. Newsbot! Literature Watch 0 02-22-2011 12:00 PM
Reference-Free Validation of Short Read Data krobison Literature Watch 1 09-23-2010 05:40 PM

Thread Tools
Old 04-15-2014, 04:16 PM   #1
Registered Vendor
Location: San Francisco, CA

Join Date: Mar 2014
Posts: 18
Default Free Genomics Data Reference Library for the Community

In order to accelerate our understanding of the molecular basis of diseases such as cancer, it is imperative for the research community to be able to work with large cohorts of patient-derived genomics data generated by consortium efforts like The Cancer Genome Atlas (TCGA) and the Genotype Tissue Expression (GTEx) Project.

Station X is making it free & easy to rapidly mine large cohorts of patient-derived genomics data. GenePool Reference™ is a free and growing resource where human genomics data tied to corresponding clinical metadata is available for analysis and interpretation.

Simply register free-of-charge ( and get access to:

* 7,000+ samples worth of whole genomes, exomes, targeted sequencing panels, and transcriptomes including TCGA and GTEx projects, with more on the way driven by user requests
* Associated clinical metadata such as demographic, treatment, recurrence, and other features
* Built-in, best-in-class analysis & statistical tools such as profiling, comparison, time-to-endpoint, co-expression networks, gene-set enrichment, and clustering
* Interactive visualizations
* Built-in, dynamic annotations

For more information about GenePool Reference™ and the various genomics cohorts available, please click here (

If you are interested in using GenePool with your own genomics data, simply check out to find out how.

GenePool is Station X’s software environment for the management, analysis and sharing of cohort-scale genomics data. GenePool makes it easy for translational and clinical researchers to make sense of mutation and expression data derived from sequencing platforms.

Last edited by GenePool; 11-22-2014 at 12:16 AM.
GenePool is offline   Reply With Quote
Old 11-22-2014, 12:15 AM   #2
Registered Vendor
Location: San Francisco, CA

Join Date: Mar 2014
Posts: 18
Default The Cancer Genome Atlas (TCGA) comprehensively available in GenePool

Station X has recently made The Cancer Genome Atlas comprehensively available instantly for users of GenePool.

GenePool now provides instant access to the following TCGA assays:

*Somatic Mutations (per patient derived from exome sequencing of Tumor and matched Blood-Normal sample)
*RNA-Seq (genes, isoforms, exons, splice junctions)
*Protein Expression (array-based)
*DNA Methylation (chip-based)
*Copy Number (chip-based)

Check out the following SeqAnswers thread for more information:

GenePool is making genomics data management, analysis, and sharing easier!
Products @

Last edited by GenePool; 11-23-2014 at 09:27 PM.
GenePool is offline   Reply With Quote

analysis software, biomarkers, exome, genome annotation, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:18 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO