Hi,
I'm working with a client who needs to remotely access information about a sequencing run, on various instruments. For example, one can readily do this for an Ion Torrent, by reading the documentation and subsequently testing with their virtual machine, as described here:
While it's unlikely that such extensive resources are available for Illumina instruments, I would appreciate some information regarding how one might monitor progress, assuming that I could install a little bit of additional software (e.g., to rsync some files to the monitoring host) on the instrument hardware itself.
In particular, it would be nice to be able to fetch the instrument's current operating parameters, as well as information regarding progress through the current run, etc. My guess is that this would be different for, say, a NextSeq as compared with a HiSeq or MiSeq.
Assuming that there are no friendly APIs such as the Ion Torrent provides, then a good starting point would be to understand how the relevant information could be retrieved if I had an open Unix shell running on the instrument hardware itself.
My current focus is Illumina, but any similar information regarding other commonly used instruments such as PacBio would also be helpful.
Thanks in advance ...
Jonathan
I'm working with a client who needs to remotely access information about a sequencing run, on various instruments. For example, one can readily do this for an Ion Torrent, by reading the documentation and subsequently testing with their virtual machine, as described here:
While it's unlikely that such extensive resources are available for Illumina instruments, I would appreciate some information regarding how one might monitor progress, assuming that I could install a little bit of additional software (e.g., to rsync some files to the monitoring host) on the instrument hardware itself.
In particular, it would be nice to be able to fetch the instrument's current operating parameters, as well as information regarding progress through the current run, etc. My guess is that this would be different for, say, a NextSeq as compared with a HiSeq or MiSeq.
Assuming that there are no friendly APIs such as the Ion Torrent provides, then a good starting point would be to understand how the relevant information could be retrieved if I had an open Unix shell running on the instrument hardware itself.
My current focus is Illumina, but any similar information regarding other commonly used instruments such as PacBio would also be helpful.
Thanks in advance ...
Jonathan
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