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  • osvaldoreis
    Junior Member
    • May 2010
    • 2
    #1

    Augustus with RNA-Seq

    Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

    Ty
    Tags: augustus, gene prediction, rna-seq, solexa
  • steven
    Senior Member
    • Aug 2009
    • 269
    #2
    Originally posted by osvaldoreis View Post
    Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

    Ty
    Maybe try geneid instead, i know they worked on a specific NGS version for the RGASP project.
    Also, you can check out Cufflinks for instance, or Scripture.
    Last edited by steven; 07-06-2010, 09:37 AM. Reason: adding stuff

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