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Old 02-03-2016, 01:11 PM   #1
dbob
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Default Comparing contigs results from two different assembler

I have done genome assembly on a bacteria sample using SPAdes and Velvet. I have a contigs file from each of the assemblers. How can I compare these two files to see if their results are different or not?
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Old 02-03-2016, 01:18 PM   #2
fahmida
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Quote:
Originally Posted by dbob View Post
I have done genome assembly on a bacteria sample using SPAdes and Velvet. I have a contigs file from each of the assemblers. How can I compare these two files to see if their results are different or not?
Have you tried QUAST?
http://bioinf.spbau.ru/quast
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Old 02-04-2016, 04:05 AM   #3
Bukowski
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Crossposted: https://www.biostars.org/p/175413/
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