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05-17-2016, 07:02 AM
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Senior Member
Location: Paris Join Date: Aug 2011
Posts: 239
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Study of lncRNA: LNCipedia, NONCODE, MiTranscriptome, ...
Hello everybody,
Did some of you use lncRNA databases in addition to Gencode annotation to count reads in genes? I heard about MiTranscriptome, which contains ~58,000 lncRNA, and is based only on polyA RNA sequencing. I have ribodepleted samples from which I count the number of reads in each gene based on Gencode annotation. I am interested in coding and non coding elements, in lncRNA in particular. I would like to know if some of the lncRNA databases could help and can be used in combination with Gencode to characterize my RNA repertoire. (I used hg19). I would appreciate any feedback. Thank you |
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