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Old 03-22-2017, 06:42 AM   #1
Location: Missouri

Join Date: Jan 2013
Posts: 21
Default Visualize just non-synonymous variants in IGV


I used snpeff to annotate a set of variants and I would like to only visualize where a particular type of variant (non-synonymous mutations) localize on the chromosomes in the IGV.

Is there a method for doing this from the vcf file or do I need to extract the non-synonymous variants first?

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igv, snps, visualization tools

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