Human exon, intron and promotor bedfile

khb · 12-22-2010, 03:28 AM

Hi
I have done a chip-seq analysis and got a file with name peaks.bed I want to investigate if the peaks are in the promotor, exon og intron of hg19. Does somebody know where to get the bedfiles of promotor, exon and intron of humans?
I've tried UCSC genomebrowser and Table, but when I use intersectbed, this files consist of many different transcripts or something like that. Does somebody know how to get this?

Thanks a lot

csoong · 12-22-2010, 06:47 AM

ucsc table shouldwork
choose the BED format for the table you need to download

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12-22-2010, 03:28 AM	#1
khb Member Location: Oslo Join Date: Dec 2010 Posts: 15	Human exon, intron and promotor bedfile Hi I have done a chip-seq analysis and got a file with name peaks.bed I want to investigate if the peaks are in the promotor, exon og intron of hg19. Does somebody know where to get the bedfiles of promotor, exon and intron of humans? I've tried UCSC genomebrowser and Table, but when I use intersectbed, this files consist of many different transcripts or something like that. Does somebody know how to get this? Thanks a lot

12-22-2010, 06:47 AM	#2
csoong Member Location: Connecticut Join Date: Jun 2009 Posts: 74	ucsc table shouldwork choose the BED format for the table you need to download