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Old 01-24-2011, 12:46 PM   #1
rdu
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Default BLAST output parsing in R?

Is there a package, or some special way to parse BLAST output by programming in R? Thanks.
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Old 01-25-2011, 12:14 AM   #2
NicoBxl
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the easiest way is to produce a tabular output from blast (-m 8 param I think ) and then to read this output in R with the command

var <- read.table(out.blast , sep="\t")
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Old 01-25-2011, 05:21 AM   #3
sdarko
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Use "-outfmt 6" to get tabular output from blast.

Sam
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Old 01-25-2011, 07:25 AM   #4
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Got it, thank you!
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