SEQanswers - Threads Tagged with hisat2

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Threads Tagged with hisat2

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Threads Tagged with hisat2
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Refernece Genome for Wheat (Rna-seq) with Hisat2 hira	01-17-2019 08:22 AM by GenoMax	1	248	Bioinformatics
	Transcriptome construction Zunaick	12-05-2018 03:23 AM by Zunaick	0	512	RNA Sequencing
	Htseq_processing double number of aligned reads amit123	10-22-2018 12:06 AM by amit123	0	453	Bioinformatics
	HISAT2: a surprising read shows up in alignment results yip	07-18-2018 05:58 PM by yip	1	557	Bioinformatics
	Running STAR on Windows WSL Jandropu	07-16-2018 12:37 AM by Jandropu	2	845	Bioinformatics
	cufflinks: input alignment from hisat2 dovah	05-09-2018 02:09 AM by sahusarika	5	4,075	RNA Sequencing
	Hisat2 index with splice sites bvk	02-01-2018 08:51 AM by bvk	0	1,685	RNA Sequencing
	Hisat2: no command found in bash SamH2017	09-27-2017 06:08 PM by SamH2017	2	1,605	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-12-2017 12:10 AM by dpryan	5	1,512	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-10-2017 12:53 AM by tirohia	0	565	Bioinformatics
	HISAT2: advantages of build index using annotated transcripts dekontrol	06-22-2017 11:41 PM by dekontrol	0	1,474	Bioinformatics
	Align full length contigs instead of reads sagnikbanerjee15	06-04-2017 08:16 PM by sagnikbanerjee15	4	1,338	General
	HISAT2 reads aligned concordantly exactly 1 time Beyounique	05-18-2017 04:03 PM by Beyounique	2	2,713	Bioinformatics
	Hisat2 reporting of uniquely mapped reads Slacanch	05-08-2017 01:27 AM by Slacanch	0	1,246	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 12:03 PM by jol.espinoz	0	2,504	Genomic Resequencing
	HISAT2 not reporting all splice sites? mattdoug	04-28-2017 01:53 PM by mattdoug	0	993	Bioinformatics
	Junctions.bed file in hisat2? badribioinfo	03-12-2017 10:47 AM by badribioinfo	1	4,001	The Pipeline
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py / --genotype-vcf & VCF_fnames kevinrue	02-23-2017 07:05 AM by kevinrue	5	1,784	RNA Sequencing
	HISAT2 2.0.5 update tor	02-14-2017 08:31 AM by tor	0	1,293	General
	Not 100% mapping in output bam? ronaldrcutler	01-04-2017 05:31 AM by ronaldrcutler	2	1,363	Bioinformatics
	HTSeq-count: Warning: x reads with missing mate encountered. ronaldrcutler	12-24-2016 08:00 AM by ronaldrcutler	0	2,586	Bioinformatics
	Hisat2: Differing amount of reads in mates ronaldrcutler	12-21-2016 04:59 PM by dcameron	3	2,105	Bioinformatics
	Indexing- Exons and splice sites New2Bioinfo	12-15-2016 09:01 AM by biocomputer	5	2,640	General
	HISAT2 unmapped reads Ursus07	10-21-2016 05:11 PM by Ursus07	2	2,570	Bioinformatics
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py: only first variant in output kevinrue	07-18-2016 05:25 AM by kevinrue	1	1,521	RNA Sequencing
	Gene Name nomenclature ronaldrcutler	07-07-2016 07:51 AM by ronaldrcutler	0	1,347	Bioinformatics
	Sorting SAM files ronaldrcutler	07-01-2016 10:08 AM by ronaldrcutler	6	2,580	RNA Sequencing
	hisat2 file reads don't match up ronaldrcutler	06-21-2016 12:04 PM by ronaldrcutler	19	2,833	RNA Sequencing
	hisat2 multiple thread usage ronaldrcutler	06-16-2016 10:12 AM by ronaldrcutler	6	3,210	RNA Sequencing
	HISAT2 tran and snp indices RichardJActon	05-12-2016 03:50 AM by RichardJActon	0	1,938	RNA Sequencing

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