SEQanswers - Threads Tagged with hisat2

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Threads Tagged with hisat2

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Threads Tagged with hisat2
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Hisat2 output is empty Niloofar	08-14-2021 07:48 PM by Niloofar	1	2,047	Bioinformatics
	Running STAR on Windows WSL Jandropu	05-07-2021 02:00 AM by vz33	4	5,497	Bioinformatics
	Parallelising Hisat2 frankenndoc	03-07-2019 11:31 AM by frankenndoc	0	2,104	Bioinformatics
	Refernece Genome for Wheat (Rna-seq) with Hisat2 hira	01-17-2019 07:22 AM by GenoMax	1	2,576	Bioinformatics
	Transcriptome construction Zunaick	12-05-2018 02:23 AM by Zunaick	0	2,701	RNA Sequencing
	Htseq_processing double number of aligned reads amit123	10-21-2018 11:06 PM by amit123	0	2,354	Bioinformatics
	HISAT2: a surprising read shows up in alignment results yip	07-18-2018 04:58 PM by yip	1	2,507	Bioinformatics
	cufflinks: input alignment from hisat2 dovah	05-09-2018 01:09 AM by sahusarika	5	8,108	RNA Sequencing
	Hisat2 index with splice sites bvk	02-01-2018 07:51 AM by bvk	0	4,124	RNA Sequencing
	Hisat2: no command found in bash SamH2017	09-27-2017 05:08 PM by SamH2017	2	4,812	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-11-2017 11:10 PM by dpryan	5	4,017	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-09-2017 11:53 PM by tirohia	0	2,192	Bioinformatics
	HISAT2: advantages of build index using annotated transcripts dekontrol	06-22-2017 10:41 PM by dekontrol	0	4,152	Bioinformatics
	Align full length contigs instead of reads sagnikbanerjee15	06-04-2017 07:16 PM by sagnikbanerjee15	4	3,495	General
	HISAT2 reads aligned concordantly exactly 1 time Beyounique	05-18-2017 03:03 PM by Beyounique	2	5,843	Bioinformatics
	Hisat2 reporting of uniquely mapped reads Slacanch	05-08-2017 12:27 AM by Slacanch	0	3,756	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	9,714	Genomic Resequencing
	HISAT2 not reporting all splice sites? mattdoug	04-28-2017 12:53 PM by mattdoug	0	2,964	Bioinformatics
	Junctions.bed file in hisat2? badribioinfo	03-12-2017 09:47 AM by badribioinfo	1	11,734	The Pipeline
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py / --genotype-vcf & VCF_fnames kevinrue	02-23-2017 06:05 AM by kevinrue	5	4,424	RNA Sequencing
	HISAT2 2.0.5 update tor	02-14-2017 07:31 AM by tor	0	3,077	General
	Not 100% mapping in output bam? ronaldrcutler	01-04-2017 04:31 AM by ronaldrcutler	2	3,410	Bioinformatics
	HTSeq-count: Warning: x reads with missing mate encountered. ronaldrcutler	12-24-2016 07:00 AM by ronaldrcutler	0	5,378	Bioinformatics
	Hisat2: Differing amount of reads in mates ronaldrcutler	12-21-2016 03:59 PM by dcameron	3	5,243	Bioinformatics
	Indexing- Exons and splice sites New2Bioinfo	12-15-2016 08:01 AM by biocomputer	5	5,402	General
	HISAT2 unmapped reads Ursus07	10-21-2016 04:11 PM by Ursus07	2	6,231	Bioinformatics
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py: only first variant in output kevinrue	07-18-2016 04:25 AM by kevinrue	1	3,777	RNA Sequencing
	Gene Name nomenclature ronaldrcutler	07-07-2016 06:51 AM by ronaldrcutler	0	3,235	Bioinformatics
	Sorting SAM files ronaldrcutler	07-01-2016 09:08 AM by ronaldrcutler	6	5,967	RNA Sequencing
	hisat2 file reads don't match up ronaldrcutler	06-21-2016 11:04 AM by ronaldrcutler	19	8,517	RNA Sequencing

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