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Threads Tagged with bam

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Threads Tagged with bam
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Question on reads mapping smallRNA-seq (100% feature coverage) Liam_Gallagher	04-20-2018 07:26 AM by Liam_Gallagher	0	70	Bioinformatics
	Microarray data (bedGraph) to metaplot. rivered	04-16-2018 06:05 AM by colindaven	1	344	Bioinformatics
	Extracting specific gene regions from BAM file using GTF LRU	04-06-2018 06:59 AM by LRU	0	130	Bioinformatics
	HTSeq - how do I cimport it for Cython? Proteos	03-26-2018 11:12 AM by Proteos	0	241	Bioinformatics
	Interpretation of Gene coverage profile from qualimap bvk	02-20-2018 02:28 AM by bvk	0	426	Illumina/Solexa
	PacBio raw .bam file anotherSAM	12-18-2017 12:03 AM by gringer	14	1,947	Pacific Biosciences
	UCSC Encode files issue with MAPQ and Flags Jandropu	11-27-2017 01:24 PM by Jandropu	0	402	Bioinformatics
	Bam file with unmapped reads from another genome than reference Vca80553	09-19-2017 02:48 PM by Brian Bushnell	5	699	Bioinformatics
	Filter paired end reads by ID in bam file Vca80553	09-16-2017 02:06 AM by Vca80553	0	332	Bioinformatics
	Correct way of merging samples for father, mother, child trio variant calling Eurioste	07-05-2017 08:01 PM by finswimmer	1	493	Bioinformatics
	BWA sam -> bam in pipeline Virome	05-17-2017 06:26 AM by GenoMax	5	1,205	Bioinformatics
	Fusion reads in BAM Anastaziel	04-04-2017 06:37 AM by Anastaziel	0	639	Bioinformatics
	Does BAM file from SRA contain aligned reads? cyber222	03-22-2017 04:43 AM by mbblack	2	1,058	Bioinformatics
	Extracting HLA-E allele sequences from BAM for gene editing emily202	03-14-2017 08:11 AM by emily202	0	550	Bioinformatics
	Using MAC for analysis of proteins. RobbenStijn	02-21-2017 02:46 AM by RobbenStijn	0	586	Bioinformatics
	Making a coverage track of ZNF778 RobbenStijn	02-21-2017 02:39 AM by RobbenStijn	6	686	Bioinformatics
	FASTQ must die! Long live SAM/BAM! maubp	12-14-2016 11:09 AM by RamakrishnanRS	15	9,362	Bioinformatics
	replacing CIGAR string dayhan	11-02-2016 05:50 AM by dayhan	8	1,625	Bioinformatics
	The easiest/fastest way to get from BAM to TPM or RPKM ( 1 2) feralBiologist	11-01-2016 06:50 AM by LacquerHead	22	11,047	Bioinformatics
	Liftover bam from custom amplicon to hg19 anna_vt	10-31-2016 11:23 AM by wdecoster	1	723	Bioinformatics
	Bug with eXpress: Unable to open input SAM file Trevaly	10-24-2016 01:21 PM by Trevaly	0	622	Bioinformatics
	XS tags in hisat2 alignment dovah	08-07-2016 02:00 AM by dovah	4	1,499	Bioinformatics
	visualisation of RNAseq (kallisto to IGV) KamilSJaron	07-12-2016 07:52 AM by KamilSJaron	1	1,862	Bioinformatics
	RSEM bam question RikyJKD	07-12-2016 12:53 AM by RikyJKD	2	801	Bioinformatics
	Is there a difference between a .sam produced by tophat2 and bowtie2? meabh	05-24-2016 07:32 AM by Michael.Ante	1	787	RNA Sequencing
	Tophat2: prepare unmapped.bam file for input into a tophat run on alternative genome danielsbrewer	05-20-2016 12:57 AM by fchatonnet	10	6,359	RNA Sequencing
	Multiple files with same barcode in TCGA cacti	04-21-2016 02:38 PM by m_two	3	1,020	Bioinformatics
	uuid's for custom download of cancer cell line encyclopedia fk566938	04-10-2016 04:25 PM by fk566938	0	717	Bioinformatics
	downsampling read pairs from a bam file EcoRInya	04-05-2016 10:14 AM by EcoRInya	8	2,193	Bioinformatics
	Chrom Sizes for Ensembl Reference imsharmanitin	03-30-2016 02:39 AM by imsharmanitin	5	1,736	RNA Sequencing

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