SEQanswers - Threads Tagged with bam

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Threads Tagged with bam

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Threads Tagged with bam
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	BWA sam -> bam in pipeline Virome	05-17-2017 06:26 AM by GenoMax	5	328	Bioinformatics
	Fusion reads in BAM Anastaziel	04-04-2017 06:37 AM by Anastaziel	0	449	Bioinformatics
	Does BAM file from SRA contain aligned reads? cyber222	03-22-2017 04:43 AM by mbblack	2	761	Bioinformatics
	Extracting HLA-E allele sequences from BAM for gene editing emily202	03-14-2017 08:11 AM by emily202	0	364	Bioinformatics
	Using MAC for analysis of proteins. RobbenStijn	02-21-2017 02:46 AM by RobbenStijn	0	435	Bioinformatics
	Making a coverage track of ZNF778 RobbenStijn	02-21-2017 02:39 AM by RobbenStijn	6	457	Bioinformatics
	FASTQ must die! Long live SAM/BAM! maubp	12-14-2016 11:09 AM by RamakrishnanRS	15	8,430	Bioinformatics
	replacing CIGAR string dayhan	11-02-2016 05:50 AM by dayhan	8	1,133	Bioinformatics
	The easiest/fastest way to get from BAM to TPM or RPKM ( 1 2) feralBiologist	11-01-2016 06:50 AM by LacquerHead	22	8,921	Bioinformatics
	Liftover bam from custom amplicon to hg19 anna_vt	10-31-2016 11:23 AM by wdecoster	1	560	Bioinformatics
	Bug with eXpress: Unable to open input SAM file Trevaly	10-24-2016 01:21 PM by Trevaly	0	468	Bioinformatics
	XS tags in hisat2 alignment dovah	08-07-2016 02:00 AM by dovah	4	1,132	Bioinformatics
	visualisation of RNAseq (kallisto to IGV) KamilSJaron	07-12-2016 07:52 AM by KamilSJaron	1	1,326	Bioinformatics
	RSEM bam question RikyJKD	07-12-2016 12:53 AM by RikyJKD	2	581	Bioinformatics
	Is there a difference between a .sam produced by tophat2 and bowtie2? meabh	05-24-2016 07:32 AM by Michael.Ante	1	610	RNA Sequencing
	Tophat2: prepare unmapped.bam file for input into a tophat run on alternative genome danielsbrewer	05-20-2016 12:57 AM by fchatonnet	10	5,636	RNA Sequencing
	Multiple files with same barcode in TCGA cacti	04-21-2016 02:38 PM by m_two	3	746	Bioinformatics
	uuid's for custom download of cancer cell line encyclopedia fk566938	04-10-2016 04:25 PM by fk566938	0	527	Bioinformatics
	downsampling read pairs from a bam file EcoRInya	04-05-2016 10:14 AM by EcoRInya	8	1,341	Bioinformatics
	Chrom Sizes for Ensembl Reference imsharmanitin	03-30-2016 02:39 AM by imsharmanitin	5	1,246	RNA Sequencing
	fastq2bam carolW	02-10-2016 04:09 AM by GenoMax	15	1,419	Bioinformatics
	Lost pairing info after bwa mem ArtemLada	01-10-2016 09:26 PM by ArtemLada	2	820	Bioinformatics
	Recreating TCGA FASTQ file from BAM and unaligned files - How to randomize reads? methylnick	09-22-2015 01:43 PM by methylnick	5	1,267	Bioinformatics
	extracting complete sequence for every transcript from a bam file dena.dinesh	08-13-2015 07:21 AM by rnaeye	1	560	Bioinformatics
	GATK Haplotype Caller calls Indels in SOLID reads that IGV does not Display wariobrega	08-12-2015 06:46 AM by wariobrega	5	2,635	SOLiD
	displaying 454 data on ucsc litali	08-06-2015 12:40 AM by litali	0	380	Bioinformatics
	How to convert SOLiD BAMs to XSQ or csfasta? anibhax	07-06-2015 11:41 AM by anibhax	0	1,341	SOLiD
	MACS "Exception: Can't detect format!" error uchillama	06-05-2015 10:43 AM by uchillama	0	830	Bioinformatics
	CIGAR inconsist with read length. Does Bowtie2 reedit read sequence? wisense	05-26-2015 11:35 PM by dpryan	5	1,444	Bioinformatics
	Tophat2 output bam size discrepancies Sentinel156	05-19-2015 09:34 AM by Brian Bushnell	1	740	RNA Sequencing

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