SEQanswers - Threads Tagged with bedtools

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Threads Tagged with bedtools

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Threads Tagged with bedtools
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	BedTools Fisher Question megannj	04-06-2020 11:28 AM by megannj	0	893	Bioinformatics
	Couting number of similar reads in sam file and output in bed file bobbyle0210	11-08-2019 08:41 AM by GenoMax	1	1,225	Bioinformatics
	Unable to intersect BAM file with bedtools cursecatcher	05-04-2018 02:20 PM by cursecatcher	4	1,880	Bioinformatics
	BEDTools coverageBed error JMorlan	04-23-2018 12:17 AM by limits999	1	2,735	Bioinformatics
	Question on reads mapping smallRNA-seq (100% feature coverage) Liam_Gallagher	04-20-2018 08:26 AM by Liam_Gallagher	0	2,081	Bioinformatics
	bedToBam gives empty output rivered	03-26-2018 12:09 PM by rivered	1	2,096	Bioinformatics
	How to compare single-end vs paired-end RNA-seq data? mick	01-23-2018 08:44 PM by mick	0	1,356	Bioinformatics
	MACS2 output on Galaxy not readbale by BedTools on Galaxy __sequence	12-02-2017 02:20 PM by __sequence	0	1,176	Bioinformatics
	Can or should we perform feature counting with `bedtools intersect -c`? foolishbrat	09-01-2017 08:11 AM by GenoMax	1	1,516	Bioinformatics
	problems with bedtools mapBed dphansti	08-28-2017 03:19 AM by ildem	1	1,483	Bioinformatics
	bedtools - adding fields to bedpe files toadstools	01-06-2017 12:42 PM by dblyons	1	1,987	Bioinformatics
	weird compiling of bedtools lre1234	09-21-2016 05:26 AM by lre1234	2	1,482	Bioinformatics
	bedtools makes ubuntu 14.04 slow cmccabe	07-14-2016 11:36 AM by GenoMax	6	1,417	Bioinformatics
	QTL overlap (bedtools) clarissaboschi	06-30-2016 03:10 AM by pengchy	3	4,666	Bioinformatics
	Stats help, interpreting the output of bedtools fisher biocomputer	04-20-2016 04:41 PM by biocomputer	0	2,298	Bioinformatics
	Chrom Sizes for Ensembl Reference imsharmanitin	03-30-2016 03:39 AM by imsharmanitin	5	4,159	RNA Sequencing
	Need help understanding the method from this paper antifolate	02-12-2016 08:57 AM by antifolate	0	2,253	Bioinformatics
	BEDTOOLS multicov, different reads count for the same ind on two experiements cmonat	11-20-2015 02:57 AM by cmonat	0	1,296	Bioinformatics
	Calculating coverage based on full insert size from paired-end data rnaeye	11-09-2015 10:49 AM by Brian Bushnell	3	2,953	Bioinformatics
	Calculating coverage of SNPs aprilw	08-27-2015 06:33 AM by aprilw	0	1,684	Bioinformatics
	bedtools ninja_help	08-25-2015 10:03 AM by ninja_help	0	1,077	Bioinformatics
	bedtools giving me an error, new program suggestions? ninja_help	08-13-2015 09:08 AM by ninja_help	2	1,242	Bioinformatics
	is bedtools paired-end aware? lre1234	08-12-2015 10:16 AM by lre1234	0	1,174	Bioinformatics
	Intersecting multiple bed files asapp	07-24-2015 06:18 AM by asapp	2	2,204	Bioinformatics
	error with htseq count and bed tool meghavarshney	07-03-2015 04:58 AM by meghavarshney	7	2,514	Bioinformatics
	bedtools command output cmccabe	06-19-2015 06:14 AM by cmccabe	2	1,178	Bioinformatics
	bedTools 2.20.1 coverageBed cmccabe	06-18-2015 08:10 AM by cmccabe	1	1,214	Bioinformatics
	Small RNA Read Counts WHP	12-27-2014 09:37 PM by vivi-Jasmine	2	1,834	Bioinformatics
	can't make bedtools clueless_in_ct	07-15-2014 01:12 PM by bio_boris	6	2,741	Bioinformatics
	Bedtools Intersection files bnfoguy	06-17-2014 01:31 AM by dpryan	1	1,776	Bioinformatics

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