SEQanswers - Threads Tagged with cuffmerge

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Threads Tagged with cuffmerge

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Threads Tagged with cuffmerge
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Cuffmerge error coultn't finda data file for Mt or Pt? Richard Barker	08-02-2017 10:22 AM by shinigam123	11	3,216	RNA Sequencing
	Problems with cuffmerge ( 1 2) Nnogueira	06-25-2016 10:38 PM by Brian Bushnell	23	12,931	Bioinformatics
	biological replicates cuffmerge? KateShepard	04-28-2016 07:52 AM by KateShepard	3	1,884	RNA Sequencing
	Cuffdiff reporting same locus several times &/or more than one gene per transcript Marta123	11-25-2015 08:40 AM by Marta123	0	1,079	Bioinformatics
	Cuffmerge error cbaudo	11-25-2015 07:51 AM by alexGrenoble	3	2,122	Bioinformatics
	Cuffmerge - merged.gtf - gffread - empty file farri	11-16-2015 02:25 AM by farri	1	1,897	RNA Sequencing
	Reference annotation file (gtf) for the NOD/ShiltJ mouse? michelletran	09-15-2015 07:16 AM by dpryan	3	1,280	RNA Sequencing
	Cuffmerge loses gene_id annotation xavier.robin	08-21-2015 02:47 AM by xavier.robin	0	1,545	RNA Sequencing
	Differential expression using TopHat/Cufflinks, analysis by CumeRbund imsharmanitin	08-17-2015 09:57 AM by csmatyi	1	1,684	RNA Sequencing
	Cuffmerge error file never signals "done"...is this normal? asapp	07-10-2015 07:00 AM by asapp	2	1,232	Bioinformatics
	Cuffmerge error (GFaSeqGet): subsequence cannot be larger than nixstix	06-29-2015 10:07 AM by nixstix	0	1,380	RNA Sequencing
	Cufflinks problem barbarian	04-12-2015 01:31 AM by barbarian	0	1,770	Bioinformatics
	Tophat error with Cuffmerged GTF Kolamite	02-21-2015 10:05 AM by Kolamite	0	1,305	RNA Sequencing
	Cuffmerge outputs only exon annotation data gwilymh	02-03-2015 11:06 AM by gwilymh	0	1,290	Bioinformatics
	cuffmerge combining genes from adjacent loci?? beeman	12-10-2014 07:13 AM by dalesan	2	2,097	Bioinformatics
	cummeRbund - how to get gene name in diffData output ( 1 2) turnersd	10-17-2014 11:33 AM by david.eby	32	29,842	Bioinformatics
	cuffmerge samples from different strains or leave separate Sentinel156	10-08-2014 06:39 PM by Sentinel156	0	1,183	RNA Sequencing
	cuffdiff: use merged.gtf from cuffmerge or combined.gtf from cuffcompare? ( 1 2) turnersd	10-02-2014 04:41 AM by Gonza	21	33,283	Bioinformatics
	gffread to output sequence, gene_id not output daikon	09-25-2014 09:27 PM by daikon	2	2,863	RNA Sequencing
	New transcript? sindrle	09-11-2014 11:48 AM by rajarapupriya	1	1,197	RNA Sequencing
	Cuffmerge can't execute gtf_to_sam thickrick99	08-18-2014 12:34 PM by thickrick99	1	2,070	RNA Sequencing
	error in Cufflinks v2.0.2 when using Cuffmerge mattanswers	07-11-2014 03:40 PM by mattanswers	2	2,528	Bioinformatics
	Warning in CuffDiff when using novel transcripts from CuffMerge as input komalsrathi	06-02-2014 11:43 AM by komalsrathi	0	1,811	RNA Sequencing
	Warning in cuffmerge genome1	05-15-2014 11:01 AM by genome1	2	2,910	General
	Can't use my SAM files for cuffdiff jasminegirl18	02-18-2014 10:21 PM by jasminegirl18	8	2,039	Bioinformatics
	A question about FPKM value in the Tophat/Cufflinks pipeline baptist	12-22-2013 04:03 AM by baptist	0	1,821	RNA Sequencing
	Cuffmerge output with missing strand information, htseq-count error komalsrathi	11-27-2013 02:00 PM by dpryan	1	3,002	Bioinformatics
	cuffDiff "cannot open reference GTF file" gwilymh	11-19-2013 02:06 PM by liweixie	2	3,377	Bioinformatics
	cuffmerge assembly vs denovo assembly of RNAseq data skm	10-16-2013 10:16 PM by skm	0	1,953	Bioinformatics
	CuffDiff cannot opn BAM file made in TopHat gwilymh	09-12-2013 04:04 AM by dpryan	2	3,038	Bioinformatics

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