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Threads Tagged with tophat

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Threads Tagged with tophat
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Tophat2 alignment problem ajsn6c	02-26-2018 10:59 AM by ajsn6c	0	591	RNA Sequencing
	Tophat: segment-based junction search failed with err =-11 jdanderson	10-14-2017 06:47 AM by pepperoni	15	7,470	Bioinformatics
	Hisat2 vs Tophat2 variation between tech reps kuristy	10-04-2017 01:23 PM by kuristy	1	549	Bioinformatics
	tophat-fusion result chxu	08-20-2017 10:34 AM by chxu	0	535	Bioinformatics
	Tophat for filtering of stranded library bnitm	08-10-2017 09:04 AM by Brian Bushnell	1	522	Bioinformatics
	TopHat error: could not open writer pipe gzip JonB	07-30-2017 07:19 AM by seqprone	11	5,174	Bioinformatics
	Fusion reads in BAM Anastaziel	04-04-2017 06:37 AM by Anastaziel	0	639	Bioinformatics
	Tophat for finding long ncRNA with short reads? KevinLam	02-24-2017 09:11 AM by sahusarika	3	3,684	Bioinformatics
	TopHat (Tuxedo Suite) - AWS vs Local drsnafu1831	12-14-2016 08:36 AM by Brian Bushnell	1	939	RNA Sequencing
	Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 12:02 AM by suparmin	27	36,257	RNA Sequencing
	Help with TOPHAT on genepattern mavadhani	10-21-2016 11:46 AM by bhill	1	809	Introductions
	How to create a GTF/GFF file for HTSeq OR how to count reads without GTF? Biol	10-05-2016 09:39 PM by Persistent LABS	1	962	RNA Sequencing
	Different alignment rate of Tophat with and without GTF file dena.dinesh	08-09-2016 03:24 AM by GenoMax	1	1,052	Bioinformatics
	Tophat chromosome position greater than chromosome size DNAmethylome	07-27-2016 11:39 PM by dpryan	2	1,070	Bioinformatics
	NOTEST everywhere with cuffdiff ramiro2k	07-20-2016 07:09 AM by ramiro2k	3	1,106	Bioinformatics
	Gene Name nomenclature ronaldrcutler	07-07-2016 06:51 AM by ronaldrcutler	0	772	Bioinformatics
	Tophat problem - IndexError: list index out of range Jetse	06-07-2016 03:53 AM by nath223	5	3,835	Bioinformatics
	Reads Mapped but 0 FPKM for Every Gene ivygreen	05-24-2016 10:47 PM by Michael.Ante	6	1,774	RNA Sequencing
	Tophat2: prepare unmapped.bam file for input into a tophat run on alternative genome danielsbrewer	05-20-2016 12:57 AM by fchatonnet	10	6,360	RNA Sequencing
	cross species RNA-seq/orthologs KateShepard	05-19-2016 03:27 AM by colindaven	1	1,400	RNA Sequencing
	Tophat Reporting output tracks - [FAILED] ( 1 2) all_your_base	05-12-2016 08:12 AM by ngoc_nguyen	32	17,850	Bioinformatics
	TopHat- index file edeka	04-27-2016 07:19 AM by cpad0112	2	963	Bioinformatics
	Tophat Inner Mean Distance priyam21292	04-25-2016 11:29 PM by Michael.Ante	1	901	General
	How to count the reads mapping to different regions from tophat output vivienne_lovely	04-19-2016 10:39 AM by bvk	5	3,468	RNA Sequencing
	Warning: Encountered reference sequence with only gaps digitonin	03-10-2016 12:18 AM by dpryan	12	6,074	Bioinformatics
	Tophat transcriptome indexing aprice67	03-03-2016 10:50 AM by aprice67	4	1,259	Bioinformatics
	Tophat: generate junctions.bed file from BAM file Julien Roux	01-14-2016 03:19 PM by trackavinash	5	3,615	Bioinformatics
	Alignment Quality Tools for BWA and Tophat Hercules	12-26-2015 05:10 AM by Hercules	0	1,067	Bioinformatics
	Illumina reads failing to map to bacterial genome with Tophat C9r1y	12-07-2015 06:51 AM by capricy	2	2,043	Bioinformatics
	TopHat2 command fk566938	11-21-2015 10:50 AM by Brian Bushnell	4	1,826	Bioinformatics

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