SEQanswers - Threads Tagged with bbduk

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Threads Tagged with bbduk

Threads Tagged with bbduk
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Introducing Reformat, a fast read format converter ( 1 2) Brian Bushnell	02-03-2021 12:35 PM by GenoMax	39	33,342	Bioinformatics
	Introducing BBDuk: Adapter/Quality Trimming and Filtering ( 1 2 3 ... Last Page) Brian Bushnell	10-29-2020 03:23 AM by Lamma	335	158,606	Bioinformatics
	Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files ( 1 2 3 ... Last Page) Brian Bushnell	07-10-2020 07:06 PM by phylloxera	109	38,389	Bioinformatics
	bbsplit not using all reads in library ghd21	01-24-2020 04:11 AM by GenoMax	3	1,438	Bioinformatics
	bbduk and removing adapters of varying length unionicola	01-10-2020 09:08 AM by unionicola	2	1,542	Bioinformatics
	Adding barcode indexes back into FASTQ headers? PeatMaster	12-20-2019 09:11 AM by GenoMax	7	5,680	Bioinformatics
	Trimming stringency w/ excessive data adamrork	12-13-2019 10:46 AM by adamrork	2	1,792	Bioinformatics
	Extract reads from paired-end fastq based on specific adapters with bbduk gspirito	11-12-2019 07:37 AM by gspirito	2	1,688	Bioinformatics
	Comparing bbduk with fastp for quality and adapter trimming tamu_anand	10-31-2019 04:12 PM by tamu_anand	0	1,656	Bioinformatics
	How does trimq work in BBDuk? jnarag	09-16-2019 12:30 PM by jnarag	0	1,382	Bioinformatics
	Has anyone used BBTools package to remove contaminants tamu_anand	07-21-2019 05:02 PM by GenoMax	4	2,124	Bioinformatics
	Extract Seq from Primers on BBDuK m.a.celik	05-16-2019 08:39 AM by m.a.celik	3	2,403	Bioinformatics
	Looking for the sequence of a particular transcript from sequencing data the_august	01-21-2019 11:23 AM by the_august	0	1,644	Bioinformatics
	bbduk useshortkmers - no documentation djmlewis	12-07-2018 09:10 AM by lmolokin	1	1,813	Bioinformatics
	BBduk for NexteraXT arivers	05-07-2018 11:52 AM by GenoMax	3	1,896	Bioinformatics
	BBDuk java error when filtering using entropy? DrYak	03-02-2018 07:25 AM by GenoMax	5	3,005	Bioinformatics
	bbtools: how to properly set up rqcfilter sghignone	11-06-2017 04:24 AM by sghignone	2	2,855	Bioinformatics
	Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias Brian Bushnell	10-20-2017 04:56 AM by santiagorevale	16	7,725	Bioinformatics
	Primer filtering with bbduk / bbduk2.sh Latrunculia	10-07-2016 06:33 AM by Latrunculia	0	2,335	Illumina/Solexa
	How do you specify error rate in BBduk adapter trimming? antifolate	07-07-2016 04:00 PM by Brian Bushnell	11	4,147	Bioinformatics
	BBDuk primer trimming on MiSeq 16S data_primers with deletion errors not trimmed PeatMaster	04-15-2016 10:49 AM by PeatMaster	1	2,836	Illumina/Solexa
	Adapter trimming with BBduk PeatMaster	04-01-2016 12:18 PM by PeatMaster	4	4,118	Illumina/Solexa
	bbduk for mirna mapping danova	02-03-2016 08:01 PM by Brian Bushnell	1	2,273	Bioinformatics
	bbduk with a large reference database danova	01-29-2016 09:56 PM by Brian Bushnell	8	2,825	Bioinformatics
	Introducing KmerCompressor, a tool for set operations on kmers Brian Bushnell	10-06-2015 11:54 PM by luc	3	5,652	Bioinformatics
	Illumina PE reads optimal pre-processing sequence TauOvermind	10-02-2014 09:01 AM by TauOvermind	7	4,798	Bioinformatics

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