SEQanswers - Threads Tagged with cuffdiff

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Threads Tagged with cuffdiff

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Threads Tagged with cuffdiff
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	cummeRbund - how to get gene name in diffData output ( 1 2) turnersd	03-23-2020 06:06 AM by NRB	33	37,787	Bioinformatics
	What is the cuffdiff output really telling you? turnersd	02-08-2020 09:30 AM by bbm	8	14,103	Bioinformatics
	Comparing MiSeq output from different runs strepthroat	06-07-2018 10:41 AM by GenoMax	1	2,439	RNA Sequencing
	Can I test for differential expression using FPKM values? JonB	03-05-2018 03:11 AM by atulchandra	7	7,932	Bioinformatics
	KEGG with pathview using CuffDiff data PierBJX	11-16-2017 02:16 AM by PierBJX	0	1,813	Bioinformatics
	Analysing only exons from ONE gene using RNAseq sindrle	03-13-2017 01:12 PM by sindrle	8	2,632	Bioinformatics
	How can I select my Chip-seq genes (targets) in my Rna-seq data? luisnagano	02-08-2017 02:54 PM by luisnagano	0	2,517	Bioinformatics
	Cuffdiff - Error: number of labels must match number of conditions Dani	12-31-2016 10:51 AM by Brian Bushnell	3	3,426	Bioinformatics
	Cuffdiff not generating the fpkm values mavadhani	12-13-2016 10:35 AM by mavadhani	0	2,504	RNA Sequencing
	Help with sorting sam files in python! mavadhani	12-08-2016 11:14 AM by mavadhani	6	4,812	General
	Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 01:02 AM by suparmin	27	59,914	RNA Sequencing
	cuff diff error krushnach80	10-18-2016 06:37 AM by krushnach80	0	1,900	RNA Sequencing
	shiny_cuffdiff: On-the-fly interrogation and plotting of gene expression results danwiththeplan	09-30-2016 12:57 AM by MikhailFokin	8	3,862	Bioinformatics
	spliceR: problems in detecting NMD sensitivity from RNA-seq data znasim09	08-23-2016 06:45 PM by znasim09	0	1,945	RNA Sequencing
	NOTEST everywhere with cuffdiff ramiro2k	07-20-2016 08:09 AM by ramiro2k	3	3,145	Bioinformatics
	Reads Mapped but 0 FPKM for Every Gene ivygreen	05-24-2016 11:47 PM by Michael.Ante	6	3,991	RNA Sequencing
	how does cuffdiff calculate replicate FPKM values? KateShepard	05-19-2016 03:18 AM by KateShepard	0	2,168	RNA Sequencing
	Cuffdiff confidence intervals - relative quantitation human_urostor	03-31-2016 07:30 AM by human_urostor	0	2,179	Bioinformatics
	Segmentation Fault 11, cuffdiff 2.2.1 adhac	03-25-2016 12:51 PM by ghazal	2	3,889	Bioinformatics
	shiny_cuffdiff: On-the-fly interrogation and plotting of gene expression results danwiththeplan	01-24-2016 07:59 PM by danwiththeplan	0	1,945	RNA Sequencing
	Cuffdiff results with frag-bias-correct vary considerably when re-runing asier_gonzalez	12-04-2015 07:28 AM by asier_gonzalez	0	2,407	Bioinformatics
	Issues with cuffdiff ClemBuntu	11-18-2015 01:00 AM by ClemBuntu	0	2,061	Bioinformatics
	multi-read-correct not working in Cuffdiff 2.2.1 michaelleonard	10-26-2015 01:36 PM by michaelleonard	1	3,806	Bioinformatics
	strand information and cuffdiff failures - can't tell what is wrong smcinturf	10-23-2015 08:20 AM by smcinturf	0	2,339	Illumina/Solexa
	error in cummeRbund dispersionPlot frymor	09-03-2015 04:16 AM by zsanli	4	4,712	Bioinformatics
	cuffdiff results lethalfang	08-26-2015 04:13 PM by lethalfang	0	2,169	Bioinformatics
	Cuffdiff p-value distributions and replicates dlawrence	08-24-2015 05:04 AM by wanfahmi	10	7,058	Bioinformatics
	Differential expression using TopHat/Cufflinks, analysis by CumeRbund imsharmanitin	08-17-2015 09:57 AM by csmatyi	1	2,932	RNA Sequencing
	how to set one sample as a control for my other sample in gene differential analysis meghavarshney	08-11-2015 08:15 AM by AndrewO	1	2,109	Bioinformatics
	How to deal with multiple accepted_hits.bam file as input into cuffdiff? canhu	06-07-2015 07:17 AM by mfahim	1	3,134	RNA Sequencing

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