SEQanswers - Threads Tagged with picard

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Threads Tagged with picard

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Threads Tagged with picard
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Confusing Picard HsMetrics ON_BAIT_VS_SELECTED for near=250 and near=0 floydian_slip	02-11-2020 01:12 PM by floydian_slip	0	635	Bioinformatics
	Exact duplicate reads/readnames/quality/tiles in Novaseq FASTQs ECO	12-05-2019 02:53 PM by saimonara	6	3,249	Illumina/Solexa
	Picard InsertSizeMetrics Output Interpretation OlgaMikh	04-25-2019 07:40 AM by OlgaMikh	0	1,700	Bioinformatics
	BAM -> FASTQ why can I not produce the same result? Alex Lee	12-11-2018 10:39 AM by atpoint	1	2,020	Bioinformatics
	Dictionary size problem in Picard HsMetrics cursecatcher	05-06-2018 04:49 PM by cursecatcher	1	955	Bioinformatics
	mark duplicates option edeka	10-04-2016 03:13 AM by dpryan	1	1,159	Bioinformatics
	Confused about RG ID LB even after reading all posts/GATK best practices Studentlost	03-08-2016 04:40 AM by dpryan	3	2,830	Bioinformatics
	Picard IlluminaBasecallsToSam: Read Structure user 31888	02-26-2016 12:00 PM by GenoMax	3	2,200	Bioinformatics
	fastq2bam carolW	02-10-2016 05:09 AM by GenoMax	15	4,497	Bioinformatics
	Picard-Tools ValidateSamFile Error Question JezSupreme	01-15-2016 01:41 AM by grillino	5	6,542	Bioinformatics
	Error with MarkDuplicates in Picard slowsmile	11-01-2015 04:16 AM by zhkzhou	13	18,556	Bioinformatics
	Difference between bait and target region Brambo	10-08-2015 08:56 AM by david_2012	1	5,537	Bioinformatics
	Problem removing duplicate reads? (samtools and picard) cbl	09-17-2015 12:01 PM by dpryan	19	22,162	Bioinformatics
	Error in flags after picard FixMateInformation? oriol	05-20-2015 01:24 AM by gmarco	2	2,322	Bioinformatics
	Cannot add sequence that already exists in SAMSequenceDictionary Flyingfrog	05-01-2015 08:38 AM by Flyingfrog	0	3,190	Bioinformatics
	Problem replacing contigs in a dbsnp vcf using Picard SortVcf idedios	04-16-2015 05:46 PM by idedios	0	1,777	Bioinformatics
	Picard Interval File nexgengirl	01-24-2015 07:57 AM by manducasexta	11	12,045	Bioinformatics
	Is read duplication the wrong metric? jwfoley	01-20-2015 02:30 AM by Bukowski	1	1,897	Bioinformatics
	Picard, Markduplicates agraz	11-18-2014 06:28 AM by agraz	0	2,045	Bioinformatics
	Can I use multicore processor for Java applications Picard and GATK? (multi-core) JoshT	10-17-2014 06:36 AM by Baseless	7	8,490	Bioinformatics
	preseq works on deduplicated BAM files? ewels	09-24-2014 08:59 AM by ewels	0	1,177	Bioinformatics
	Picardtools MarkDuplicates Question lre1234	09-11-2014 10:01 AM by lre1234	0	1,167	Bioinformatics
	Estimated very low inset size from bam file using picard anurag_chaturvedi	05-28-2014 04:09 AM by anurag_chaturvedi	0	1,480	Bioinformatics
	editing header files sasignor	05-05-2014 02:00 PM by dpryan	3	1,733	Bioinformatics
	Flagstat vs. Picard AlignmentSummaryMetrics sinemi	02-28-2014 09:57 AM by gibberwocky	1	2,328	Bioinformatics
	[PICARD] Problems with SAM/BAM files without header apeltzer	02-10-2014 05:44 AM by dpryan	2	2,014	Bioinformatics
	Filtering in Picard HSMetrics? sgroenewold	01-27-2014 12:30 PM by fashar1	2	1,769	Bioinformatics
	Possible picard bug zslee	01-08-2014 01:00 AM by TiborNagy	1	1,815	RNA Sequencing
	read groups sasignor	01-07-2014 06:40 PM by rskr	2	2,344	Bioinformatics
	mate alignment error when running ValidateSamFile in Picard slowsmile	12-06-2013 12:40 PM by raphael123	5	5,233	Bioinformatics

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