SEQanswers - Threads Tagged with igv

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Threads Tagged with igv

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Threads Tagged with igv
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	alignment view and vcf disagree Mark	09-29-2020 09:02 AM by Mark	1	1,196	Bioinformatics
	IGV-Compatible FASTA Nomenclature to Indicate a Split Sequence? dstribling	06-12-2020 06:25 AM by dstribling	0	1,348	Bioinformatics
	In IGV 2.4.10 Squished view captured by Batch script, color of deletion looks white megu	06-04-2020 09:11 PM by megu	0	1,141	Bioinformatics
	Stranded library IGV zoe_ward	04-23-2019 10:05 PM by zoe_ward	0	978	Bioinformatics
	IGV not creating genome jorge-bariloche	02-11-2019 04:26 AM by jorge-bariloche	2	1,913	General
	IGV or IGB akivab	01-09-2019 05:03 AM by colindaven	1	1,888	Bioinformatics
	Samtools how many reads were mapped as a pair Fay.huo	09-14-2017 05:51 AM by Fay.huo	0	1,638	Bioinformatics
	How should a strand-specific experiment look like in IGV? panos_ed	04-07-2017 05:28 AM by gringer	18	15,392	Bioinformatics
	Visualize just non-synonymous variants in IGV cbaudo	03-22-2017 07:42 AM by cbaudo	0	1,307	Bioinformatics
	General IGV question about pileup cmccabe	12-22-2016 06:24 AM by pmiguel	1	1,815	General
	Help with genes.gct file on IGV mavadhani	10-05-2016 10:24 AM by mavadhani	0	1,680	RNA Sequencing
	visualisation of RNAseq (kallisto to IGV) KamilSJaron	07-12-2016 08:52 AM by KamilSJaron	1	4,196	Bioinformatics
	Single-cell RNA-seq coverage track not corresponding to htseq-count output or IGV ScientistShan	03-01-2016 08:07 AM by GenoMax	2	2,296	Bioinformatics
	Chromosome sizes don't match sjb343	01-20-2016 01:49 AM by dariober	1	2,587	General
	TCGA RNAseq BAM Files fk566938	12-29-2015 09:27 AM by fk566938	2	4,568	Bioinformatics
	Data from servers Accessible on IGV fk566938	12-04-2015 08:51 AM by mastal	1	1,449	Bioinformatics
	Using IGV to View Alignments fk566938	11-26-2015 01:14 AM by Michael.Ante	2	1,745	Bioinformatics
	RNA-Seq strandedness inconsistency Anomilie	11-20-2015 01:12 AM by Anomilie	0	2,255	RNA Sequencing
	vcf from bam file frymor	06-26-2015 08:59 AM by SNPsaurus	4	3,888	Bioinformatics
	IGV colors entire BAM file as inversions SrCardgage	06-23-2015 07:56 AM by SrCardgage	1	1,438	Bioinformatics
	X11/X-Windows kaps	05-21-2015 07:06 AM by GenoMax	17	2,878	General
	how can I find a read in IGV? hujiacun	04-01-2015 04:58 AM by GenoMax	2	6,492	Bioinformatics
	What does IGV track color alignments by strand when using non-stranded RNA-seq? Villy	03-20-2015 12:49 AM by sarvidsson	3	3,278	Bioinformatics
	Manual Quality Control for Variant Calls onconaut	01-22-2015 09:51 AM by HESmith	1	2,113	General
	Viewing Tophat results in IGV SEQquestions	10-17-2014 12:12 PM by Gonza	19	12,352	Bioinformatics
	Trying to check plasmid alignment chariko	07-10-2014 07:39 AM by chariko	2	2,096	Genomic Resequencing
	Identifying a good SNP on IGV alanalves	04-22-2014 11:05 AM by alanalves	0	1,917	Bioinformatics
	Visualize variants annotated with ANNOVAR Nilaksha	04-08-2014 08:44 PM by Nilaksha	5	3,009	Bioinformatics
	GSNAP output to IGV eperry	04-08-2014 04:44 AM by TiborNagy	2	1,890	Bioinformatics
	Easy way to screenshot whole region from IGV? thejustpark	03-26-2014 03:34 PM by lindenb	1	2,315	Bioinformatics

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