SEQanswers - Threads Tagged with vcf

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Threads Tagged with vcf

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Threads Tagged with vcf
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	bbmap callvariants.sh multisample vcf format, wrong number of fields Greg	Today 12:00 AM by denisDDS	5	335	Bioinformatics
	some variants disappear after bcftools norm sc_123	04-09-2018 02:25 AM by sc_123	0	282	Bioinformatics
	Adding a fake genotype column to a vcf file jweger1988	11-29-2017 01:29 PM by jweger1988	0	437	Bioinformatics
	synonymous snps from vcf bioinfun	09-19-2017 05:41 AM by MGCBrown	15	6,517	Bioinformatics
	how extract homozygous snps for first vcf file when there is no snp in same position? R.66	08-03-2017 04:30 AM by R.66	0	591	Bioinformatics
	Correct way of merging samples for father, mother, child trio variant calling Eurioste	07-05-2017 08:01 PM by finswimmer	1	495	Bioinformatics
	VCF representation of phase RWilton	05-31-2017 06:46 AM by RJWilton	0	385	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	1,037	Genomic Resequencing
	GATK multisample vcf to BayeScan input ndeshpan	03-24-2017 07:34 AM by Gopo	2	1,211	Bioinformatics
	Spurious dosage coefficient of determination in imputed VCF file olavur	03-15-2017 06:43 AM by olavur	0	470	Bioinformatics
	convert snp chip data to VCF format sbaheti	03-14-2017 05:45 PM by Elsie	2	3,036	Bioinformatics
	Can I use tabix on vcf.gz files? visse226	11-24-2016 01:58 AM by visse226	0	1,260	General
	Calculating allele frequency from VCF file bio_informatics	10-25-2016 07:50 AM by sandeep.kolya	3	3,072	Bioinformatics
	vcf file hg 38 edeka	10-04-2016 01:38 AM by edeka	0	739	Bioinformatics
	Need help understanding what "b-allele" refers to antifolate	09-21-2016 09:08 PM by antifolate	0	866	Bioinformatics
	Exome data available binfoUser	09-07-2016 01:01 AM by binfoUser	2	937	Bioinformatics
	yet another question regarding vcf format mstagliamonte	07-19-2016 12:53 PM by mstagliamonte	4	911	Bioinformatics
	$diploid, haploid, recombination, recombination fraction, vcf$ Recombination fraction estimation from VCF file Autotroph	05-30-2016 11:18 AM by Autotroph	0	666	Bioinformatics
	Comparing nucleotide diversity between two paralogs using a VCF file cfourps	05-26-2016 03:45 PM by cfourps	0	662	Bioinformatics
	extract clinical significant of a vcf variants from clinvar carolW	03-25-2016 12:24 AM by carolW	2	916	Bioinformatics
	convert vcf to hapmap sandesh	02-16-2016 07:06 AM by lalchung	5	3,414	Bioinformatics
	How to get SNP abundance from a metagenomic VCF? thh32	01-15-2016 07:16 AM by thh32	0	933	Bioinformatics
	Using library htsjdk vcf files binfoUser	01-08-2016 12:45 AM by binfoUser	2	1,223	Bioinformatics
	Java library to manipulate VCF files binfoUser	01-05-2016 12:32 PM by binfoUser	6	1,938	Bioinformatics
	heterozygosity and allele balance in NGS doubt marco12345	12-30-2015 03:51 AM by colindaven	1	1,192	Bioinformatics
	Nucleotide variation from multi-sample vcf file kumar03	12-23-2015 11:27 PM by kumar03	0	855	Bioinformatics
	Creating a Genepop file from multiple VCF files lifatrahi	11-05-2015 07:22 PM by lifatrahi	0	1,070	Bioinformatics
	Transforming .ped files back to .vcf with original chrom. name mjudkins	09-25-2015 06:15 PM by mjudkins	0	865	Bioinformatics
	GATK Haplotype Caller calls Indels in SOLID reads that IGV does not Display wariobrega	08-12-2015 06:46 AM by wariobrega	5	3,518	SOLiD
	VCF Record Help mattvincent	07-27-2015 06:11 PM by lindenb	1	603	Bioinformatics

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