SEQanswers - Threads Tagged with samtools

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Threads Tagged with samtools

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Threads Tagged with samtools
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	BAM to FASTQ picard or samtools anoopkmr	08-09-2018 01:18 PM by anoopkmr	0	505	Bioinformatics
	Subsample regions of too high coverage sbrohee	06-08-2018 02:12 AM by sbrohee	1	413	Bioinformatics
	Fixing BAM file header. Getting "truncated file. Aborting" error dfermin315	06-01-2018 04:32 AM by dfermin315	2	444	Bioinformatics
	bcftools - retain low quality read position support? clintp	05-17-2018 03:42 PM by clintp	0	342	Bioinformatics
	Question about Samtools Mpileup -u option clintp	05-04-2018 02:15 PM by clintp	0	340	Bioinformatics
	samtools: BAQ differs between mpileup and calmd adeirossi	04-12-2018 02:57 PM by kjohnsen	1	3,115	Bioinformatics
	Bowtie2 exact match and same length Aquilifer	04-09-2018 04:42 AM by Aquilifer	0	531	Bioinformatics
	bedToBam gives empty output rivered	03-26-2018 11:09 AM by rivered	1	534	Bioinformatics
	Incosistent number of paired end reads (BAM file generated by STAR using RSEM) Dolev Rahat	02-19-2018 04:39 AM by Dolev Rahat	0	470	Bioinformatics
	removing chromosomes from a bam file. tirohia	09-27-2017 03:22 AM by GenoMax	1	1,343	Bioinformatics
	Samtools how many reads were mapped as a pair Fay.huo	09-14-2017 04:51 AM by Fay.huo	0	574	Bioinformatics
	Samtools mac install problems mevs	06-21-2017 08:22 AM by GenoMax	1	888	Bioinformatics
	BWA sam -> bam in pipeline Virome	05-17-2017 06:26 AM by GenoMax	5	2,247	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	1,753	Genomic Resequencing
	Fusion reads in BAM Anastaziel	04-04-2017 06:37 AM by Anastaziel	0	929	Bioinformatics
	How can I dissect .sam files in text editor?? JacquesT	03-23-2017 07:34 AM by mastal	5	1,166	Bioinformatics
	Tablet viewing issue JacquesT	03-21-2017 08:50 AM by JacquesT	0	830	Bioinformatics
	Issue with mpileup quantic	03-20-2017 07:57 AM by quantic	0	704	Bioinformatics
	A question on Illumina paired-end reads alignment. Merging from different samples linudz	02-27-2017 10:16 AM by Brian Bushnell	4	1,200	Bioinformatics
	Problem Converting BAM to SAM on to Amazon S3 Using Samtools foolishbrat	02-20-2017 05:11 PM by gringer	1	832	Bioinformatics
	Samtools version 1.3.1 merge function, merging two bam, doesnt contain all the info. bioinfotechs	02-01-2017 06:13 AM by bioinfotechs	0	893	Bioinformatics
	Question: bcftools: Wrong number of PL fields? nals=4 npl=6 schumric	01-09-2017 10:37 AM by schumric	3	1,589	Illumina/Solexa
	HTSeq-count: Warning: x reads with missing mate encountered. ronaldrcutler	12-24-2016 07:00 AM by ronaldrcutler	0	2,244	Bioinformatics
	BBmap can not produce sorted bam zhanghao	12-09-2016 02:57 PM by Brian Bushnell	10	2,687	Bioinformatics
	replacing CIGAR string dayhan	11-02-2016 05:50 AM by dayhan	8	2,117	Bioinformatics
	Questions concerning samtools bedcov finswimmer	10-16-2016 11:29 PM by finswimmer	5	1,804	Bioinformatics
	samtools mpileup Pushpinder	08-24-2016 09:04 AM by Pushpinder	0	954	Bioinformatics
	visualisation of RNAseq (kallisto to IGV) KamilSJaron	07-12-2016 07:52 AM by KamilSJaron	1	2,283	Bioinformatics
	confusion about BCFtools "EXPRESSIONS" flags lstbl	06-27-2016 07:37 AM by lstbl	0	827	Bioinformatics
	Empty VCF file with bcftools call AP38	05-10-2016 09:24 AM by AP38	8	1,603	Bioinformatics

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