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Threads Tagged with samtools

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Threads Tagged with samtools
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	samtools: BAQ differs between mpileup and calmd adeirossi	04-12-2018 02:57 PM by kjohnsen	1	2,848	Bioinformatics
	Bowtie2 exact match and same length Aquilifer	04-09-2018 04:42 AM by Aquilifer	0	292	Bioinformatics
	bedToBam gives empty output rivered	03-26-2018 11:09 AM by rivered	1	289	Bioinformatics
	Incosistent number of paired end reads (BAM file generated by STAR using RSEM) Dolev Rahat	02-19-2018 04:39 AM by Dolev Rahat	0	293	Bioinformatics
	removing chromosomes from a bam file. tirohia	09-27-2017 03:22 AM by GenoMax	1	683	Bioinformatics
	Samtools how many reads were mapped as a pair Fay.huo	09-14-2017 04:51 AM by Fay.huo	0	393	Bioinformatics
	Samtools mac install problems mevs	06-21-2017 08:22 AM by GenoMax	1	553	Bioinformatics
	BWA sam -> bam in pipeline Virome	05-17-2017 06:26 AM by GenoMax	5	1,212	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	1,032	Genomic Resequencing
	Fusion reads in BAM Anastaziel	04-04-2017 06:37 AM by Anastaziel	0	639	Bioinformatics
	How can I dissect .sam files in text editor?? JacquesT	03-23-2017 07:34 AM by mastal	5	915	Bioinformatics
	Tablet viewing issue JacquesT	03-21-2017 08:50 AM by JacquesT	0	610	Bioinformatics
	Issue with mpileup quantic	03-20-2017 07:57 AM by quantic	0	542	Bioinformatics
	A question on Illumina paired-end reads alignment. Merging from different samples linudz	02-27-2017 10:16 AM by Brian Bushnell	4	877	Bioinformatics
	Problem Converting BAM to SAM on to Amazon S3 Using Samtools foolishbrat	02-20-2017 05:11 PM by gringer	1	641	Bioinformatics
	Samtools version 1.3.1 merge function, merging two bam, doesnt contain all the info. bioinfotechs	02-01-2017 06:13 AM by bioinfotechs	0	672	Bioinformatics
	Question: bcftools: Wrong number of PL fields? nals=4 npl=6 schumric	01-09-2017 10:37 AM by schumric	3	1,210	Illumina/Solexa
	HTSeq-count: Warning: x reads with missing mate encountered. ronaldrcutler	12-24-2016 07:00 AM by ronaldrcutler	0	1,926	Bioinformatics
	BBmap can not produce sorted bam zhanghao	12-09-2016 02:57 PM by Brian Bushnell	10	2,105	Bioinformatics
	replacing CIGAR string dayhan	11-02-2016 05:50 AM by dayhan	8	1,628	Bioinformatics
	Questions concerning samtools bedcov finswimmer	10-16-2016 11:29 PM by finswimmer	5	1,445	Bioinformatics
	samtools mpileup Pushpinder	08-24-2016 09:04 AM by Pushpinder	0	772	Bioinformatics
	visualisation of RNAseq (kallisto to IGV) KamilSJaron	07-12-2016 07:52 AM by KamilSJaron	1	1,863	Bioinformatics
	confusion about BCFtools "EXPRESSIONS" flags lstbl	06-27-2016 07:37 AM by lstbl	0	626	Bioinformatics
	Empty VCF file with bcftools call AP38	05-10-2016 09:24 AM by AP38	8	1,235	Bioinformatics
	Samtools tview: mysterious KKKK within introns. valei	05-02-2016 12:27 AM by kristina.gagalova	4	1,490	Bioinformatics
	A problem of using Samtools to make VCF file watermelon1037	04-19-2016 08:48 PM by watermelon1037	0	836	Bioinformatics
	hisat2 output more reads than are in the file frymor	04-12-2016 11:01 AM by dpryan	1	1,597	Bioinformatics
	Samtools is failing to phase bam files accurately gwilymh	03-30-2016 01:29 PM by gwilymh	0	726	Bioinformatics
	samtools mpileup multiple bam files lizzi	03-09-2016 05:40 AM by Kulvait	9	3,050	Bioinformatics

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