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Threads Tagged with deseq

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Threads Tagged with deseq
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	DESeq analysis with ERCC RNA spike ins swebb	06-14-2018 05:39 AM by finixtree	15	12,078	Bioinformatics
	Can I use DESeq and edgeR for mixed ANOVA abebe	07-13-2017 04:45 AM by Simon Anders	18	15,345	Illumina/Solexa
	DESeq2: resultsnames missing info available in colData glados	05-10-2017 06:51 AM by glados	0	2,322	RNA Sequencing
	Error in microbial count object: Error in hatmatrix/non-conformable arguments bugbitten	12-23-2016 12:32 AM by cam687	5	4,136	Bioinformatics
	use Deseq to calculate samples partially without replicates susielav	11-22-2016 04:48 PM by susielav	0	1,712	RNA Sequencing
	DESeq factor design, and optimal number of samples Lugalbanda	10-07-2016 12:50 AM by SylvainL	5	2,147	Bioinformatics
	Gene Name nomenclature ronaldrcutler	07-07-2016 06:51 AM by ronaldrcutler	0	2,494	Bioinformatics
	DESeq Pushpinder	05-23-2016 10:11 AM by Pushpinder	0	1,494	Bioinformatics
	DESeq with FPKM values frymor	04-29-2016 12:29 PM by dpryan	12	7,163	Bioinformatics
	Should I sequence un-replicated blocks in RNAseq? aliceb	04-22-2016 12:32 PM by aliceb	0	2,230	RNA Sequencing
	Differential Expression "categorisation" BeKl	04-20-2016 11:27 AM by marRoma	11	2,864	Bioinformatics
	DEseq no significant genes friendlypelican	04-05-2016 05:11 AM by friendlypelican	0	1,895	RNA Sequencing
	Assigning reads to genes in the absence of genomic annotation moldach	03-09-2016 01:20 PM by shi	8	3,636	RNA Sequencing
	Differential expression of small subset of genes from RNASeq dataset Tryptamine	03-09-2016 09:17 AM by Tryptamine	0	2,495	RNA Sequencing
	DESeq2 merged vs unmerged replicates spabinger	03-01-2016 01:37 AM by dpryan	3	2,721	Bioinformatics
	Differential expression analysis using DESeq for TCGA data alrossi	02-02-2016 07:46 AM by alrossi	0	2,759	Bioinformatics
	DESeq2 SummarizedExperiment0 Error Beemo	10-18-2015 09:03 AM by Beemo	2	3,408	RNA Sequencing
	Why sum technical replicates instead of averaging (and rounding) for DESeq? friducha	09-25-2015 10:03 PM by dpryan	5	4,193	Bioinformatics
	DESeq2 Circadian Time Series without time 0 jaw_bio	09-18-2015 12:29 AM by jaw_bio	2	2,894	RNA Sequencing
	Using alternative normalization method in DESeq analysis of gene enrichment simon_seq	08-27-2015 11:11 AM by dpryan	4	2,576	Bioinformatics
	Finding differentially expressed genes between species ishasethi7	08-26-2015 02:12 PM by ishasethi7	0	1,916	RNA Sequencing
	DESeq2 Contrasts cacti	08-04-2015 11:20 AM by Lohman	4	9,512	Bioinformatics
	What happened to per-condition and gene-est-only in DESeq2? friducha	07-17-2015 10:46 AM by friducha	2	2,530	Bioinformatics
	DESeq2 and GLM with grouped samples in two conditions friducha	07-17-2015 04:02 AM by dpryan	1	2,215	Bioinformatics
	Start analysis from DESeq2-normalized read counts? friducha	07-04-2015 05:40 AM by Michael Love	1	3,326	Bioinformatics
	Benchmarking DGE Tools as a function of Replicates Genohub	06-03-2015 08:03 PM by Genohub	0	1,682	Bioinformatics
	Can I apply DESeq to techinical replicates?? Sora Yoon	04-24-2015 01:54 AM by Caroline336	6	2,762	RNA Sequencing
	filter for sequences shared among replicates criggs	03-31-2015 09:46 PM by Brian Bushnell	1	2,408	Bioinformatics
	read counts per transcript, edgeR, tophat ( 1 2 3) chrisbala	02-27-2015 04:51 AM by wanfahmi	46	30,381	Bioinformatics
	P-Val not significant for diff expressed genes chirag.parsania	01-24-2015 08:23 AM by dpryan	1	2,135	RNA Sequencing

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