SEQanswers - Threads Tagged with hisat2

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Threads Tagged with hisat2

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Threads Tagged with hisat2
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Parallelising Hisat2 frankenndoc	03-07-2019 11:31 AM by frankenndoc	0	1,369	Bioinformatics
	Running STAR on Windows WSL Jandropu	03-04-2019 11:47 PM by sellarturcica	3	3,170	Bioinformatics
	Refernece Genome for Wheat (Rna-seq) with Hisat2 hira	01-17-2019 07:22 AM by GenoMax	1	1,819	Bioinformatics
	Transcriptome construction Zunaick	12-05-2018 02:23 AM by Zunaick	0	1,999	RNA Sequencing
	Htseq_processing double number of aligned reads amit123	10-21-2018 11:06 PM by amit123	0	1,652	Bioinformatics
	HISAT2: a surprising read shows up in alignment results yip	07-18-2018 04:58 PM by yip	1	1,737	Bioinformatics
	cufflinks: input alignment from hisat2 dovah	05-09-2018 01:09 AM by sahusarika	5	6,938	RNA Sequencing
	Hisat2 index with splice sites bvk	02-01-2018 07:51 AM by bvk	0	3,322	RNA Sequencing
	Hisat2: no command found in bash SamH2017	09-27-2017 05:08 PM by SamH2017	2	3,862	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-11-2017 11:10 PM by dpryan	5	3,202	RNA Sequencing
	Hisat2 multithreading not working. tirohia	09-09-2017 11:53 PM by tirohia	0	1,554	Bioinformatics
	HISAT2: advantages of build index using annotated transcripts dekontrol	06-22-2017 10:41 PM by dekontrol	0	3,186	Bioinformatics
	Align full length contigs instead of reads sagnikbanerjee15	06-04-2017 07:16 PM by sagnikbanerjee15	4	2,672	General
	HISAT2 reads aligned concordantly exactly 1 time Beyounique	05-18-2017 03:03 PM by Beyounique	2	4,725	Bioinformatics
	Hisat2 reporting of uniquely mapped reads Slacanch	05-08-2017 12:27 AM by Slacanch	0	2,881	Bioinformatics
	How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	6,749	Genomic Resequencing
	HISAT2 not reporting all splice sites? mattdoug	04-28-2017 12:53 PM by mattdoug	0	2,197	Bioinformatics
	Junctions.bed file in hisat2? badribioinfo	03-12-2017 09:47 AM by badribioinfo	1	8,570	The Pipeline
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py / --genotype-vcf & VCF_fnames kevinrue	02-23-2017 06:05 AM by kevinrue	5	3,463	RNA Sequencing
	HISAT2 2.0.5 update tor	02-14-2017 07:31 AM by tor	0	2,404	General
	Not 100% mapping in output bam? ronaldrcutler	01-04-2017 04:31 AM by ronaldrcutler	2	2,608	Bioinformatics
	HTSeq-count: Warning: x reads with missing mate encountered. ronaldrcutler	12-24-2016 07:00 AM by ronaldrcutler	0	4,306	Bioinformatics
	Hisat2: Differing amount of reads in mates ronaldrcutler	12-21-2016 03:59 PM by dcameron	3	4,168	Bioinformatics
	Indexing- Exons and splice sites New2Bioinfo	12-15-2016 08:01 AM by biocomputer	5	4,462	General
	HISAT2 unmapped reads Ursus07	10-21-2016 04:11 PM by Ursus07	2	4,862	Bioinformatics
	HISAT2 / hisat2_extract_snps_haplotypes_VCF.py: only first variant in output kevinrue	07-18-2016 04:25 AM by kevinrue	1	3,007	RNA Sequencing
	Gene Name nomenclature ronaldrcutler	07-07-2016 06:51 AM by ronaldrcutler	0	2,494	Bioinformatics
	Sorting SAM files ronaldrcutler	07-01-2016 09:08 AM by ronaldrcutler	6	4,965	RNA Sequencing
	hisat2 file reads don't match up ronaldrcutler	06-21-2016 11:04 AM by ronaldrcutler	19	6,424	RNA Sequencing
	hisat2 multiple thread usage ronaldrcutler	06-16-2016 09:12 AM by ronaldrcutler	6	6,358	RNA Sequencing

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