SEQanswers - Threads Tagged with bam file

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Threads Tagged with bam file

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Threads Tagged with bam file
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	No mutations in BAM (IGV) but a mutation in final VCF? mhmtgenc	04-11-2018 04:42 AM by Markiyan	1	1,790	Bioinformatics
	Cufflinks: sort order of reads in bams must be the same arabidopsis	02-08-2017 04:16 AM by eieneg	2	4,148	RNA Sequencing
	Counting Reads in BAM file per genomic position C9r1y	11-24-2015 02:11 PM by blancha	4	2,273	Bioinformatics
	SNP coverage using Pile up From RSamtools MAPK	11-05-2015 10:42 PM by MAPK	0	2,396	Bioinformatics
	Calculating coverage of SNPs aprilw	08-27-2015 05:33 AM by aprilw	0	2,180	Bioinformatics
	Counting the total number of SNPs in a transcript dena.dinesh	08-11-2015 05:47 AM by dena.dinesh	0	1,442	Bioinformatics
	Lack of paired mate in BAM file PJohn	07-02-2015 02:36 PM by PJohn	0	1,470	Bioinformatics
	IGV colors entire BAM file as inversions SrCardgage	06-23-2015 06:56 AM by SrCardgage	1	1,927	Bioinformatics
	HTseq-count error: mate pairs cannot be matched paulb5677	11-12-2014 06:25 AM by paulb5677	0	1,837	Bioinformatics
	How to convert CRAM back to BAM using samtools hthl85	10-08-2014 11:25 AM by hthl85	5	13,671	Bioinformatics
	Specifying read group info for multiple samples per lane in SAM/BAM files (for GATK) pgugger	06-27-2014 11:33 AM by pgugger	0	2,111	Bioinformatics
	Samtools 0.1.19, Unbuntu 14.04, problem getting a consensus skbrimer	05-30-2014 12:52 PM by skbrimer	2	2,676	Bioinformatics
	Exon locations in Novel Transcripts mattia	05-29-2014 01:30 AM by mattia	0	1,381	Bioinformatics
	Estimated very low inset size from bam file using picard anurag_chaturvedi	05-28-2014 03:09 AM by anurag_chaturvedi	0	1,981	Bioinformatics
	Online tools to generate count tables from sam/bam files lanner	05-05-2014 08:26 AM by maubp	4	3,523	Bioinformatics
	Extracting a subset of bam files toreoe	04-15-2014 07:23 AM by dpryan	6	5,406	Bioinformatics
	Samtools and bcftools: Why aren't some of the calls "missing data". molecules	01-10-2014 10:07 AM by molecules	0	1,746	Bioinformatics
	Viewing multiple BAM files in Artemis tospo	12-17-2013 11:04 PM by Soni	6	3,362	Bioinformatics
	CuffDiff cannot opn BAM file made in TopHat gwilymh	09-12-2013 03:04 AM by dpryan	2	4,766	Bioinformatics
	Can anyone explain BAM indexing algorithm to me? asiangg	08-26-2013 09:28 AM by asiangg	5	28,102	Bioinformatics
	filtering properly paired reads and flagstat output volavii	08-09-2013 01:06 AM by dpryan	4	2,587	Bioinformatics
	keeping heterozygote information in fasta format from .bam files pjalvaro	06-12-2013 11:39 PM by bmuchmore	1	2,744	Bioinformatics
	SAMtools Text Alignment Viewer tommycarstensen	06-03-2013 11:10 AM by tommycarstensen	0	2,918	Bioinformatics
	basic question: number of callable bases gmd	04-07-2013 11:10 AM by aeonsim	1	2,318	General
	What is the Reference to be used for RNA-Seq assembly? rohitngs	02-26-2013 01:29 AM by rohitngs	11	2,770	RNA Sequencing
	Using DEXSeq with bam files Jetse	01-04-2013 06:58 AM by Jetse	0	1,658	Bioinformatics
	BAM speed: i/o, uncompress, etc. cycomatto	10-04-2012 04:06 AM by adaptivegenome	5	3,406	Bioinformatics
	Subsampling bam files cdias	08-27-2012 01:14 AM by TiborNagy	3	3,643	Bioinformatics
	Gene Sums for Chip-Seq Data BenS	07-25-2012 10:52 AM by BenS	3	2,457	Epigenetics
	NextBrowse: Web-based genomics visualization and BAM hosting tool. jack_bauer	02-08-2012 08:48 AM by oiiio	14	4,479	Bioinformatics

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