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Threads Tagged with bbmap

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Threads Tagged with bbmap
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2 3 ... Last Page) Brian Bushnell	Yesterday 12:42 PM by OwenLeiser	679	215,032	Bioinformatics
	Introducing Reformat, a fast read format converter ( 1 2) Brian Bushnell	02-03-2021 12:35 PM by GenoMax	39	33,185	Bioinformatics
	alignment view and vcf disagree Mark	09-29-2020 09:02 AM by Mark	1	1,378	Bioinformatics
	Splitting a FastQ file into two Thias	07-27-2020 10:15 AM by Thias	2	1,029	Bioinformatics
	Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files ( 1 2 3 ... Last Page) Brian Bushnell	07-10-2020 07:06 PM by phylloxera	109	38,297	Bioinformatics
	Introducing BBMerge: A paired-end read merger ( 1 2 3 ... Last Page) Brian Bushnell	06-19-2020 04:15 AM by ashr0077	132	75,754	Bioinformatics
	Incorrect bbmap quality trimming maxz411	04-16-2020 02:40 PM by maxz411	4	1,002	Bioinformatics
	Yes .. BBMap can do that! ( 1 2 3 ... Last Page) GenoMax	04-03-2020 09:40 AM by AndrewP	244	112,980	Bioinformatics
	What RNAseq mapper to use? Whattodo	03-20-2020 02:24 PM by Whattodo	0	2,264	RNA Sequencing
	Genome size estimation - Reg. bioramg	03-05-2020 09:27 PM by bioramg	0	988	Bioinformatics
	Spades: Failed to determine erroneous kmer threshold. Threshold set to: 22 bioramg	03-01-2020 11:53 PM by bioramg	0	1,826	Illumina/Solexa
	bbmap.sh: line 352 RANDOM# Killed jylee	02-22-2020 04:26 AM by GenoMax	1	1,442	Bioinformatics
	bbsplit not using all reads in library ghd21	01-24-2020 04:11 AM by GenoMax	3	1,425	Bioinformatics
	bbduk and removing adapters of varying length unionicola	01-10-2020 09:08 AM by unionicola	2	1,532	Bioinformatics
	Adding barcode indexes back into FASTQ headers? PeatMaster	12-20-2019 09:11 AM by GenoMax	7	5,665	Bioinformatics
	Extract reads from paired-end fastq based on specific adapters with bbduk gspirito	11-12-2019 07:37 AM by gspirito	2	1,671	Bioinformatics
	Introducing Tadpole: an assembler, error-corrector, and read-extender ( 1 2 3 ... Last Page) Brian Bushnell	07-27-2019 03:57 PM by silverfox	104	41,680	Bioinformatics
	BBmap generates Bam files with duplications in sequence sequence names Lechu	06-18-2019 08:18 AM by jiaco	6	1,518	Bioinformatics
	Calling BBMerge from Java program maxbio	06-05-2019 09:03 AM by GenoMax	1	1,481	Bioinformatics
	Extract Seq from Primers on BBDuK m.a.celik	05-16-2019 08:39 AM by m.a.celik	3	2,395	Bioinformatics
	Wrong mapping with BBmap default parameters aushev	05-08-2019 07:02 AM by aushev	2	1,732	Bioinformatics
	Looking for the sequence of a particular transcript from sequencing data the_august	01-21-2019 11:23 AM by the_august	0	1,637	Bioinformatics
	Strand Specific mapping ionescu	01-08-2019 04:22 AM by ionescu	0	1,789	Bioinformatics
	Meanings of "MB" in unambiguousMB generated by BBmap zeam	12-05-2018 07:42 AM by zeam	0	1,502	Bioinformatics
	MinHash Sketch - A Tool for Rapid Sequence Comparison Brian Bushnell	10-21-2018 02:08 PM by nano85	9	7,611	Bioinformatics
	question about dedupe renameclusters option shandley	09-29-2018 05:02 PM by shandley	0	1,464	Bioinformatics
	quantifying transcripts in a redundant genome garlic	08-31-2018 07:50 AM by ASintsova	1	2,085	Bioinformatics
	Error encountered when running kmercountexact.sh from bbmap lfaller	06-11-2018 04:59 PM by neavemj	1	1,987	Bioinformatics
	BBMap pileup questions rmf	06-06-2018 05:28 AM by silask	3	3,207	Bioinformatics
	calctruequality in bbmap Coyk	05-08-2018 01:57 PM by Coyk	0	2,020	Bioinformatics

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