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Threads Tagged with mapping

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Threads Tagged with mapping
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	best suitable aligner for RNA-seq mapping yueli	Today 07:16 AM by yueli	2	48	Illumina/Solexa
	Microarray data (bedGraph) to metaplot. rivered	04-16-2018 06:05 AM by colindaven	1	329	Bioinformatics
	Mapping reads to find coding regions Diede	04-04-2018 05:51 AM by Diede	0	153	Bioinformatics
	STAR: ultrafast universal RNA-seq aligner ( 1 2 3 ... Last Page) alexdobin	04-02-2018 05:59 PM by drdna	218	113,795	Bioinformatics
	Mapping Human RNA Seq: Transcriptome vs. Genome JueFish	01-17-2018 09:47 AM by sdriscoll	9	9,248	Bioinformatics
	bowtie 2 dpad parameter explanation Gorgon_VZ	01-10-2018 11:25 AM by sdriscoll	2	455	Bioinformatics
	Issues related to MyPro tool ankit4035	07-31-2017 11:09 PM by ankit4035	0	468	Bioinformatics
	TopHat error: could not open writer pipe gzip JonB	07-30-2017 07:19 AM by seqprone	11	5,167	Bioinformatics
	Variable Bismark mapping efficiency of targetted BS data for DNA methylation dross11	05-26-2017 05:15 AM by fkrueger	10	923	Bioinformatics
	Why mapping rate is low after adapter trimming paired-end data? foolishbrat	02-11-2017 09:26 AM by Brian Bushnell	4	1,021	Bioinformatics
	Difficulty getting annotation for some UniRef100 IDs jorvis	02-05-2017 09:06 PM by jorvis	0	561	Bioinformatics
	Sam file from alignment of Solid Colorspace reads using Bowtie Alexis1	02-01-2017 04:51 AM by Alexis1	2	850	Bioinformatics
	Mapping possition in SAM format leontovyc_roman	11-21-2016 07:39 AM by leontovyc_roman	2	927	Bioinformatics
	Bowtie2 Error confused1	10-26-2016 07:15 AM by confused1	0	618	Bioinformatics
	Quality trimming & filtering illumina reads Rangika	09-09-2016 06:30 PM by Rangika	2	1,299	Bioinformatics
	ATAC-seq quality control Kath	09-07-2016 12:48 PM by atpoint	1	2,426	Bioinformatics
	Circular contig in multicontig reference remapping (SMRTPipe, BLASR) Gestahl	08-30-2016 07:10 AM by rhall	1	872	Pacific Biosciences
	Bowtie2 paired end --un-conc tesa	08-18-2016 12:38 AM by tesa	0	1,356	Epigenetics
	bowtie2 bit 2 of the flag KamilSJaron	07-19-2016 12:44 AM by KamilSJaron	6	1,107	Bioinformatics
	BWA gives no alignment lines in SAM file jmwhitha	06-05-2016 02:06 PM by jaredroach	17	8,052	Bioinformatics
	BWA mem on interlaced fastq mstagliamonte	04-13-2016 08:52 AM by mstagliamonte	2	1,225	Bioinformatics
	Mapping assembled genome back to reads: why SNPs? bio_informatics	04-04-2016 08:35 AM by bio_informatics	0	643	Bioinformatics
	remove scaffold and other unplaced sequence before mapping? yong peng	03-27-2016 07:28 PM by yong peng	0	842	Bioinformatics
	Hisat2 vs. bowtie2 - why does bowtie2 mapped better? frymor	03-10-2016 11:34 PM by frymor	2	2,021	Bioinformatics
	Low mapping rate of TSS-data (5'-seq) JonB	02-15-2016 04:09 AM by Michael.Ante	3	1,086	RNA Sequencing
	mpileup core dumped error with input fasta aligned bamfile. vaibhavvsk	02-10-2016 07:27 PM by vaibhavvsk	0	705	Bioinformatics
	Separating a .sam or .bam file that is based on alignment to multiple sequences sequence_hard	02-09-2016 06:05 AM by WhatsOEver	7	798	Bioinformatics
	A multi-split mapping algorithm for circular RNA, splicing, trans-splicing, and ... ( 1 2) ecSeq Bioinformatics	01-04-2016 12:05 AM by ninni	26	6,136	Bioinformatics
	Mixing paired-end and single-end reads in Tophat: Do I have to reverse the SE-reads f JonB	12-11-2015 01:08 AM by SylvainL	5	1,506	Bioinformatics
	Mapping paired-end reads, include also the SE-reads after trimming? JonB	12-10-2015 02:03 AM by JonB	2	1,163	Bioinformatics

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