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Threads Tagged with deseq

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Threads Tagged with deseq
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	DESeq analysis with ERCC RNA spike ins swebb	06-14-2018 06:39 AM by finixtree	15	8,881	Bioinformatics
	Can I use DESeq and edgeR for mixed ANOVA abebe	07-13-2017 05:45 AM by Simon Anders	18	12,106	Illumina/Solexa
	DESeq2: resultsnames missing info available in colData glados	05-10-2017 07:51 AM by glados	0	1,141	RNA Sequencing
	Error in microbial count object: Error in hatmatrix/non-conformable arguments bugbitten	12-23-2016 01:32 AM by cam687	5	2,923	Bioinformatics
	use Deseq to calculate samples partially without replicates susielav	11-22-2016 05:48 PM by susielav	0	1,144	RNA Sequencing
	DESeq factor design, and optimal number of samples Lugalbanda	10-07-2016 01:50 AM by SylvainL	5	1,341	Bioinformatics
	Gene Name nomenclature ronaldrcutler	07-07-2016 07:51 AM by ronaldrcutler	0	1,343	Bioinformatics
	DESeq Pushpinder	05-23-2016 11:11 AM by Pushpinder	0	868	Bioinformatics
	DESeq with FPKM values frymor	04-29-2016 01:29 PM by dpryan	12	4,566	Bioinformatics
	Should I sequence un-replicated blocks in RNAseq? aliceb	04-22-2016 01:32 PM by aliceb	0	1,483	RNA Sequencing
	Differential Expression "categorisation" BeKl	04-20-2016 12:27 PM by marRoma	11	1,743	Bioinformatics
	DEseq no significant genes friendlypelican	04-05-2016 06:11 AM by friendlypelican	0	1,282	RNA Sequencing
	Assigning reads to genes in the absence of genomic annotation moldach	03-09-2016 02:20 PM by shi	8	2,431	RNA Sequencing
	Differential expression of small subset of genes from RNASeq dataset Tryptamine	03-09-2016 10:17 AM by Tryptamine	0	1,550	RNA Sequencing
	DESeq2 merged vs unmerged replicates spabinger	03-01-2016 02:37 AM by dpryan	3	1,752	Bioinformatics
	Differential expression analysis using DESeq for TCGA data alrossi	02-02-2016 08:46 AM by alrossi	0	1,659	Bioinformatics
	DESeq2 SummarizedExperiment0 Error Beemo	10-18-2015 10:03 AM by Beemo	2	2,471	RNA Sequencing
	Why sum technical replicates instead of averaging (and rounding) for DESeq? friducha	09-25-2015 11:03 PM by dpryan	5	2,769	Bioinformatics
	DESeq2 Circadian Time Series without time 0 jaw_bio	09-18-2015 01:29 AM by jaw_bio	2	1,868	RNA Sequencing
	Using alternative normalization method in DESeq analysis of gene enrichment simon_seq	08-27-2015 12:11 PM by dpryan	4	1,529	Bioinformatics
	Finding differentially expressed genes between species ishasethi7	08-26-2015 03:12 PM by ishasethi7	0	1,287	RNA Sequencing
	DESeq2 Contrasts cacti	08-04-2015 12:20 PM by Lohman	4	7,895	Bioinformatics
	What happened to per-condition and gene-est-only in DESeq2? friducha	07-17-2015 11:46 AM by friducha	2	1,508	Bioinformatics
	DESeq2 and GLM with grouped samples in two conditions friducha	07-17-2015 05:02 AM by dpryan	1	1,335	Bioinformatics
	Start analysis from DESeq2-normalized read counts? friducha	07-04-2015 06:40 AM by Michael Love	1	2,228	Bioinformatics
	Benchmarking DGE Tools as a function of Replicates Genohub	06-03-2015 09:03 PM by Genohub	0	1,072	Bioinformatics
	Can I apply DESeq to techinical replicates?? Sora Yoon	04-24-2015 02:54 AM by Caroline336	6	1,807	RNA Sequencing
	filter for sequences shared among replicates criggs	03-31-2015 10:46 PM by Brian Bushnell	1	1,643	Bioinformatics
	read counts per transcript, edgeR, tophat ( 1 2 3) chrisbala	02-27-2015 05:51 AM by wanfahmi	46	25,888	Bioinformatics
	P-Val not significant for diff expressed genes chirag.parsania	01-24-2015 09:23 AM by dpryan	1	1,420	RNA Sequencing

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