SEQanswers - Threads Tagged with cuffcompare

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Threads Tagged with cuffcompare

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Threads Tagged with cuffcompare
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 12:02 AM by suparmin	27	32,168	RNA Sequencing
	Differential expression using TopHat/Cufflinks, analysis by CumeRbund imsharmanitin	08-17-2015 08:57 AM by csmatyi	1	1,158	RNA Sequencing
	Cuffmerge error (GFaSeqGet): subsequence cannot be larger than nixstix	06-29-2015 09:07 AM by nixstix	0	945	RNA Sequencing
	Filter cuffcompare by FPKM SS00	04-26-2015 01:03 AM by pengchy	1	974	RNA Sequencing
	no error and no output from cuffcompare hibachings2013	03-02-2015 02:59 PM by arkfang	1	1,538	Bioinformatics
	cuffcompare- extract locus information from XLOC/TCONS roniederer	02-09-2015 09:48 AM by roniederer	0	951	RNA Sequencing
	Cuffcompare merged.gtf to self not all "=" travis_jensen123	10-17-2014 07:36 AM by travis_jensen123	0	664	Bioinformatics
	cuffdiff: use merged.gtf from cuffmerge or combined.gtf from cuffcompare? ( 1 2) turnersd	10-02-2014 03:41 AM by Gonza	21	30,628	Bioinformatics
	Advice Needed on Tuxedo Suite thickrick99	08-13-2014 09:22 AM by kmcarr	2	1,166	RNA Sequencing
	Cuffcompare to add tss_id to GTF WHP	07-29-2014 02:10 PM by WHP	1	874	Bioinformatics
	error in Cufflinks v2.0.2 when using Cuffmerge mattanswers	07-11-2014 02:40 PM by mattanswers	2	2,027	Bioinformatics
	Is my cuffcompare output reasonable? reventropy	05-29-2014 11:55 AM by reventropy	0	800	Bioinformatics
	Cuffcompare with a single experiment reventropy	05-27-2014 06:55 PM by reventropy	4	2,786	Bioinformatics
	Cuffcompare: difference between "nearest_ref" and "oID" wariobrega	05-07-2014 02:49 AM by wariobrega	0	1,242	Bioinformatics
	Cuffcompare not showing all query transcripts canisirius	04-24-2014 06:58 AM by canisirius	2	1,145	Bioinformatics
	High level of novel exons/introns in cuffcompare data tirypr77	04-15-2014 03:36 AM by [email protected]	2	1,687	Bioinformatics
	Nothing happens after cuffcompare. thejustpark	12-09-2013 06:02 AM by westerman	2	1,494	RNA Sequencing
	CuffCompare basic question RHous	11-17-2013 10:14 AM by RHous	0	1,240	RNA Sequencing
	Differential gene expression analysis colaneri	06-14-2013 05:37 AM by colaneri	15	4,815	Bioinformatics
	cufflinks's gene model options dolsemtl	02-14-2013 09:25 PM by dolsemtl	0	1,036	RNA Sequencing
	Cuffcompare and cuffmerge using the genocode annotation file per_ngs	12-05-2012 11:47 AM by dgaston	2	2,474	Bioinformatics
	Error message in cuffcompare Line	09-20-2012 12:05 PM by Aholton	3	2,975	RNA Sequencing
	skipping cufflinks-->cuffcompare ... straight to cuffdiff? PFS	07-27-2012 05:30 AM by dietmar13	10	4,627	Bioinformatics
	run cufflink, cuffcompare and cuffdiff workflow Robin	07-16-2012 03:21 PM by IBseq	5	8,430	RNA Sequencing
	Questions on cutoff setting of FPKM value & know genes filtering in Cuffmerge result zhlingl	04-05-2012 04:31 AM by zhlingl	0	4,213	Bioinformatics
	Cufflinks workflows sheenams	11-30-2011 11:22 AM by sheenams	0	1,653	RNA Sequencing
	cuffcompare warning message Robin	10-26-2011 10:14 AM by jhb1980	8	4,930	Bioinformatics
	cufflinks no FPKM values due to gtf issue ngsbee	10-25-2011 07:39 AM by ngsbee	5	5,579	RNA Sequencing
	Empty FPKM estimates after cuffcompare henning	09-21-2011 07:53 AM by henning	2	2,099	RNA Sequencing
	RNA-seq analysis for expression result yifangt	08-26-2011 12:54 AM by Rodri	6	4,153	RNA Sequencing

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