SEQanswers - Threads Tagged with htseq-count

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Threads Tagged with htseq-count

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Threads Tagged with htseq-count
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Why HTseq warning of unfound mate pairs? slowsmile	11-15-2017 03:53 PM by Madza Farias Virgens	8	5,092	Bioinformatics
	The easiest/fastest way to get from BAM to TPM or RPKM ( 1 2) feralBiologist	11-01-2016 06:50 AM by LacquerHead	22	11,074	Bioinformatics
	htseq-count ERROR in GFF File? OxytocinHeadHunter	05-27-2016 12:37 PM by OxytocinHeadHunter	0	952	Bioinformatics
	Can I use htseq --samout file for subsequent annotation? heso	05-18-2016 06:38 AM by heso	2	566	Bioinformatics
	Single-cell RNA-seq coverage track not corresponding to htseq-count output or IGV ScientistShan	03-01-2016 07:07 AM by GenoMax	2	838	Bioinformatics
	htseq-count failure parsing GFF attribute line pshah	12-03-2015 01:22 AM by Michael.Ante	1	1,535	Bioinformatics
	IGV sees many counts, but HTSeq-count counts 0 snownontrace	08-27-2015 04:22 AM by snownontrace	12	2,261	Bioinformatics
	htseq-count __alignment_not_unique vs tophat chumho	07-24-2015 06:20 AM by chumho	4	1,714	RNA Sequencing
	Read counts from SAM file mapped to de novo assembled transcripts using HTSeq-count alan_sm	06-12-2015 08:54 PM by kurban910	2	2,624	RNA Sequencing
	Difference between Cufflinks coverage and HTSeq-count JonB	05-28-2015 06:15 AM by JonB	0	1,427	Bioinformatics
	Error in htseq-count diego diaz	04-08-2015 01:02 AM by dpryan	4	2,473	Bioinformatics
	HTSeq-count warning message ( 1 2) canhu	02-11-2015 11:02 AM by raphael123	27	15,062	Bioinformatics
	HTseq-count not giving results JenBarb	11-21-2014 10:01 AM by shikha5	14	4,937	Bioinformatics
	HTSeq-count on bam dvanic	11-12-2014 05:52 PM by tsalem	18	19,017	Bioinformatics
	Ambiguous Reads Treatment by HTSeq-Count Fernas	11-12-2014 05:18 AM by Fernas	2	1,145	Bioinformatics
	samtools sorting issue or HTSeq-count problem? bbl	10-28-2014 07:57 AM by bbl	4	1,417	Bioinformatics
	HTSeq - paired reads count nofar	10-02-2014 04:02 AM by nofar	0	1,028	Bioinformatics
	HTSeq warning message sbdk82	09-16-2014 10:08 AM by sbdk82	8	1,404	Bioinformatics
	Reference file for RNA Seq Analysis PurplePancake	08-09-2014 01:53 PM by PurplePancake	6	1,648	Bioinformatics
	Remove overlapping feature from GFF ruggedtextile	06-20-2014 05:23 AM by ruggedtextile	1	1,632	Bioinformatics
	What is wrong with merely 28% tophat2 mapped reads are counted by HTSeq-count bbl	06-19-2014 10:00 AM by Brian Bushnell	3	1,901	Bioinformatics
	HTSeq-count large proportion of mapped reads with no_feature edm1	05-26-2014 08:28 AM by RemitoAmigo	4	6,174	Bioinformatics
	Counts on single and paired ends reads merged bam file RocheKermit	03-27-2014 06:35 AM by RocheKermit	4	2,808	Bioinformatics
	help with counting reads (only 0 counts were returned) jans	03-23-2014 03:54 PM by jans	0	1,251	General
	Low number of replicates DESeq uqfgaiti	02-27-2014 10:02 PM by uqfgaiti	15	2,510	Bioinformatics
	Does HTSeq accepts BAM files from Mapsplice? narges	02-10-2014 08:38 AM by GenoMax	5	1,537	Bioinformatics
	htseq-count error message roll	01-30-2014 02:30 AM by dpryan	3	1,395	Bioinformatics
	htseq-count: reads with letter "N" zzhao2	01-27-2014 12:01 PM by zzhao2	1	1,237	Bioinformatics
	HTseq: Very few counts recognised sindrle	01-20-2014 05:00 PM by sindrle	5	1,420	Bioinformatics
	htseq-count: many reads are "no_feature". zzhao2	01-16-2014 08:23 AM by bob-loblaw	5	4,044	Bioinformatics

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