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Threads Tagged with cufflinks

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Threads Tagged with cufflinks
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	cummeRbund - how to get gene name in diffData output ( 1 2) turnersd	03-23-2020 06:06 AM by NRB	33	37,790	Bioinformatics
	What is the cuffdiff output really telling you? turnersd	02-08-2020 09:30 AM by bbm	8	14,105	Bioinformatics
	GTF modification for cufflinks eddiesalinas	07-07-2019 06:25 AM by brojee	3	3,149	Bioinformatics
	cufflinks does not understand strands? staszekdh	12-18-2018 06:49 AM by staszekdh	1	1,775	Bioinformatics
	cufflinks: input alignment from hisat2 dovah	05-09-2018 02:09 AM by sahusarika	5	6,839	RNA Sequencing
	Can Cufflinks report chimeric transcripts/fusions? DNAmethylome	02-28-2018 06:22 AM by l_zembek	2	2,628	RNA Sequencing
	Cuffset number of genes too high aprice67	05-25-2017 12:19 PM by aprice67	0	1,907	Bioinformatics
	Confidence of cufflinks denovo predicted eons JoeT	04-04-2017 11:48 AM by JoeT	0	1,820	Bioinformatics
	0 fpkm for genes with reads mparida	02-11-2017 01:05 PM by mparida	1	2,127	Bioinformatics
	How can I select my Chip-seq genes (targets) in my Rna-seq data? luisnagano	02-08-2017 02:54 PM by luisnagano	0	2,519	Bioinformatics
	Cufflinks: sort order of reads in bams must be the same arabidopsis	02-08-2017 05:16 AM by eieneg	2	3,331	RNA Sequencing
	Cufflinks error brachysclereid	02-08-2017 05:05 AM by eieneg	10	5,999	Bioinformatics
	Any advanced CummeRbund tutorials out there? dacotahm	12-15-2016 08:32 AM by dacotahm	0	2,188	RNA Sequencing
	Cufflinks---no response after run Gorson117	11-29-2016 03:21 PM by RasmusKriis	3	2,629	Bioinformatics
	Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 01:02 AM by suparmin	27	59,932	RNA Sequencing
	2 treatments and 1 control, a three way normalization for cufflink output vrutantshah	10-06-2016 02:44 PM by vrutantshah	0	2,391	Bioinformatics
	compiling of cufflinks failed due to bamlib error kristianunger	09-20-2016 03:52 PM by ohmiyajohn	3	5,732	Bioinformatics
	XS tags in hisat2 alignment dovah	08-07-2016 03:00 AM by dovah	4	3,963	Bioinformatics
	Tuxedo pipeline: cufflinks with -G option vs cuffdiff with reference asier_gonzalez	08-02-2016 11:03 AM by asier_gonzalez	4	2,800	RNA Sequencing
	Brainstorming: Error sources for Cuffquant failure: Map Mass: 0.00 Thias	07-22-2016 03:31 AM by Thias	0	2,320	RNA Sequencing
	NOTEST everywhere with cuffdiff ramiro2k	07-20-2016 08:09 AM by ramiro2k	3	3,147	Bioinformatics
	Problems with cuffmerge ( 1 2) Nnogueira	06-25-2016 10:38 PM by Brian Bushnell	23	17,164	Bioinformatics
	Reads Mapped but 0 FPKM for Every Gene ivygreen	05-24-2016 11:47 PM by Michael.Ante	6	3,993	RNA Sequencing
	cross species RNA-seq/orthologs KateShepard	05-19-2016 04:27 AM by colindaven	1	3,231	RNA Sequencing
	biological replicates cuffmerge? KateShepard	04-28-2016 07:52 AM by KateShepard	3	3,413	RNA Sequencing
	Cuffdiff confidence intervals - relative quantitation human_urostor	03-31-2016 07:30 AM by human_urostor	0	2,180	Bioinformatics
	quantifying RNAseq reads for a genbank isoforme that is not in Reference Annotation ftmir	02-11-2016 03:43 AM by ftmir	0	1,994	Bioinformatics
	How to customize cufflinks output COLUMNS habbas	12-30-2015 10:54 PM by habbas	0	2,140	Bioinformatics
	STAR + Cufflinks. Cufflinks hanging. BAM XS error? gogodidi	12-20-2015 10:19 PM by zhkzhou	3	3,810	Bioinformatics
	Illumina Directional RNA-Seq ( 1 2 3) flobpf	11-19-2015 04:18 PM by son_nexg	58	50,139	Illumina/Solexa

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