SEQanswers - Threads Tagged with paired-end

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Threads Tagged with paired-end

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Threads Tagged with paired-end
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	BBMAP paired-end alignment problem Mark	03-02-2018 09:30 AM by GenoMax	1	2,224	Bioinformatics
	how do i reduce misassemblies in spades? evolino	10-30-2017 09:22 PM by evolino	0	2,510	Bioinformatics
	strand specificity of stranded illumina paired-end libraries pole_sana	10-10-2017 04:31 AM by pole_sana	0	1,862	RNA Sequencing
	IDBA 'std::logic_error' TimG	05-17-2017 07:39 PM by TimG	0	2,069	Bioinformatics
	Trimmomatic adapter file vs Custom made file candida	05-03-2017 04:07 AM by GenoMax	1	4,194	Bioinformatics
	FastQ: trimming paired reads down to a set length mcrawford	10-31-2016 10:11 AM by mcrawford	2	3,367	Bioinformatics
	MISO: Best-guessing insert size and stddev versus running single-ended for PE data fpbarthel	08-24-2016 03:10 PM by Brian Bushnell	3	1,984	Bioinformatics
	Brainstorming: Error sources for Cuffquant failure: Map Mass: 0.00 Thias	07-22-2016 03:31 AM by Thias	0	2,320	RNA Sequencing
	Consider dovetail pairs as concordant pairs? wisense	02-08-2016 09:40 PM by dcameron	1	3,234	Illumina/Solexa
	Problem somewhere during paired-end seq analysis -> no reads mapped Alex852013	01-08-2016 12:53 AM by Alex852013	8	2,546	Bioinformatics
	Mixing paired-end and single-end reads in Tophat: Do I have to reverse the SE-reads f JonB	12-11-2015 02:08 AM by SylvainL	5	3,083	Bioinformatics
	Prinseq-lite problem kumar03	12-10-2015 06:57 PM by kumar03	4	3,927	Bioinformatics
	Paired-end Illumina reads preprocessing with Trimmomatic nmerienn	06-10-2015 02:24 AM by qadrikazmi	5	6,846	Bioinformatics
	Samtools MPILEUP on single-end/paired-end data balthasar	12-30-2014 05:55 AM by balthasar	0	2,442	Bioinformatics
	How does MACS2 treat paired-end reads? lamon	11-26-2014 04:02 AM by idonaldson	2	6,603	Bioinformatics
	0% Concordant Pair Alignment Rate StevenVanLaere	07-15-2014 02:01 AM by StevenVanLaere	0	2,686	RNA Sequencing
	Trimming paired end RNAseq - Trimmomatic sjeschonek	07-14-2014 12:52 PM by lindenb	1	4,358	Bioinformatics
	Trinity: Combining PE and SE strand-specific reads? oligo	04-16-2014 06:23 PM by oligo	6	3,700	Bioinformatics
	Code to bin reads that have been mapped thh32	02-27-2014 01:11 PM by GenoMax	8	2,351	Bioinformatics
	Is there a standard file format for FASTQ paired-end reads? danwiththeplan	01-16-2014 05:59 PM by danwiththeplan	6	9,944	Bioinformatics
	Trim the paired-end data zhoujiayi	11-30-2013 01:40 PM by arcolombo698	11	6,902	Bioinformatics
	Illumina - Paired End Barcode Split + Mip trimmer gmarco	11-18-2013 02:35 AM by gmarco	5	3,169	Bioinformatics
	paired-end vs. single end for differential expression analysis nullalleles	10-20-2013 09:46 PM by whataBamBam	9	10,719	RNA Sequencing
	Why Sanger sequencing can have the forward and reverse reads? arkilis	10-08-2013 04:41 PM by arkilis	6	16,060	Bioinformatics
	Using htseq-count with paired-end and orphaned reads roloman	09-17-2013 04:46 PM by sheltonj	5	7,110	Bioinformatics
	Bowtie Paired end 100% failed to align rahul.m.dhodapkar	09-12-2013 03:05 PM by OTU	15	17,552	Bioinformatics
	mRNA fragmentation for 100bp paired-end reads amdic2	09-01-2013 05:54 AM by amdic2	7	8,826	Illumina/Solexa
	Strange higher band in Bioanalyzer after size selection JNissen	07-12-2013 12:10 PM by colossus	6	5,206	Sample Prep / Library Generation
	Removing short reads from paired-end fastqs jakeenk	07-11-2013 09:00 AM by jakeenk	0	5,317	Bioinformatics
	Velvet + meta-velvet:which fastq format for paired-end infos? someperson	07-04-2013 09:16 AM by someperson	3	2,809	Bioinformatics

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