SEQanswers - Threads Tagged with varscan

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Threads Tagged with varscan

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Threads Tagged with varscan
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Detecting Known, Low Frequency SNPs in evolving bacterial communities jleehan	01-29-2019 08:06 AM by jleehan	2	1,637	Bioinformatics
	call indel and SNP by varscan doublealice	12-03-2015 09:32 AM by Jane M	1	3,213	Bioinformatics
	how is ABQ - Average quality of variant-supporting bases calculated in the Varscan? satishkumar	01-14-2015 01:55 PM by satishkumar	0	1,407	Bioinformatics
	Hardware requirements for various tools gilst	12-30-2014 05:12 AM by GenoMax	8	2,236	Bioinformatics
	bam-readcount warning balthasar	12-19-2014 01:15 AM by balthasar	1	3,510	Bioinformatics
	varscan - filter out those snps close to indels david.tamborero	11-19-2014 02:41 AM by vd4mindia	4	3,986	Bioinformatics
	VarScan2. Strange behaviour of somatic-p-value slois	11-18-2014 06:28 AM by vd4mindia	2	1,897	Bioinformatics
	problems with varscan2.3.7 balthasar	10-31-2014 01:12 AM by balthasar	0	1,156	Bioinformatics
	Filtering steps for VarScan2 somatic and germline calls ElenaN	08-27-2014 05:57 AM by thek71	4	5,914	Bioinformatics
	Samtools mpileup - start and end segments cboustred	06-10-2014 11:05 AM by rpauly	4	4,357	Bioinformatics
	VarScan somatic indel caller working incorrectly? ElenaN	03-03-2014 02:31 AM by rnahar	1	2,835	Bioinformatics
	VarScan- invalid format for pileup RBCT	02-27-2014 10:37 AM by nnutter	1	1,852	Introductions
	Varscan VCF output bugs(?) ( 1 2) skilpinen	02-27-2014 10:24 AM by coco90417	22	14,240	Bioinformatics
	Questions about VarScan alexbmp	02-20-2014 11:05 AM by FrankiB	7	5,163	Bioinformatics
	VarScan early halt allnovels	12-23-2013 11:01 PM by lovenlong	2	2,507	Bioinformatics
	fundamental strand bias in sequence data kingsalex	12-12-2013 07:52 AM by m_two	2	2,706	Bioinformatics
	varscan somaticFilterResults stqa8350	11-28-2013 07:05 AM by franka	6	3,687	Bioinformatics
	VarScan: somatic mutations in heterozygous sites? ElenaN	09-03-2013 08:33 AM by dkoboldt	1	3,424	Bioinformatics
	vcf files merging marco12345	06-13-2013 06:30 AM by ernfrid	3	6,145	Bioinformatics
	How Varscan process the pileup data? ( 1 2) david.tamborero	03-26-2013 07:00 AM by stvos	20	9,571	Bioinformatics
	unalble to clone repository for bam-readcount from github ashwinipatil	03-17-2013 10:10 PM by ashwinipatil	3	3,765	Bioinformatics
	Is trimming necessary before mapping SOLiD data with BFAST? sonia.bao	12-14-2012 09:02 AM by carmeyeii	12	5,645	Bioinformatics
	Varscan results annotation stqa8350	08-16-2012 08:41 AM by stqa8350	3	3,145	Bioinformatics
	samtools,varscan-SNP prediction bioman1	06-28-2012 03:30 PM by bioman1	0	1,919	Bioinformatics
	VarScan shift in counting of bases! AlbertZANG	06-18-2012 11:29 AM by AlbertZANG	0	1,399	Bioinformatics
	how does varscan somatic compute variant allele frequency? genomicist	06-11-2012 04:21 AM by genomicist	0	2,940	Bioinformatics
	--min-avg-qual of VarScan AlbertZANG	06-06-2012 05:03 PM by AlbertZANG	0	2,163	Bioinformatics
	Varscan-output interpretation bioman1	05-24-2012 01:50 PM by bioman1	0	3,043	Bioinformatics
	Manipulating normal samples for CNV analysis vikasbansal	02-20-2012 06:31 AM by vikasbansal	0	1,711	Bioinformatics
	mpileup base-quality filter does not seem to work david.tamborero	12-29-2011 11:35 AM by david.tamborero	0	2,629	Bioinformatics

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