SEQanswers - Threads Tagged with trinity

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Threads Tagged with trinity

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Threads Tagged with trinity
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Merging PE reads before de novo RNA-Seq assembly roussine	01-26-2018 03:11 AM by pmiguel	2	400	Bioinformatics
	CLC Bio vs. Trinity for de novo transcriptome assembly nurgling	07-05-2017 06:09 PM by nurgling	5	1,520	Bioinformatics
	Low GC, fragments, low read alignment jmah	03-15-2017 03:18 PM by jmah	0	441	Bioinformatics
	Installation of rnammer-1.2 for Trinnoate: which version Perl XML/Simple.pm is requir gwilymh	02-19-2016 01:19 PM by gwilymh	1	1,303	Bioinformatics
	Trinity has "99.9997% completed" for 3 days. Xiaopei	01-19-2016 01:14 AM by Xiaopei	0	886	Bioinformatics
	optimizing transcriptome assembly peromhc	01-12-2016 03:49 PM by peromhc	2	1,132	Bioinformatics
	De novo RNA-Seq Assembly using Trinity gives too many unigenes. huan	12-27-2015 10:00 PM by huan	8	3,068	RNA Sequencing
	Genome guided vs de novo - Trinity Mocca	10-09-2015 09:54 AM by Mocca	2	2,559	De novo discovery
	Trinity 2.0.6 jellyfish compilation error - error: âall_ofâ is not a member of âstdâ gwilymh	09-05-2015 03:54 PM by gwilymh	0	982	Bioinformatics
	Transcripts from RNA-seq assembly StopCodon	07-08-2015 02:58 AM by GillermoPonz	6	2,712	RNA Sequencing
	Pair-end sequence data preparation for Trancriptome assembly GillermoPonz	05-28-2015 09:37 AM by GenoMax	3	968	Bioinformatics
	How best to use --bflyHeapSpaceMax and --bflyGCThreads on Trinity gwilymh	05-13-2015 01:56 PM by gwilymh	0	1,160	Bioinformatics
	Trinity genome guided error sandesh	04-22-2015 12:56 PM by sandesh	0	1,178	Bioinformatics
	How would sequence overrepresentation affect the quality of a De Novo assembly? GillermoPonz	04-15-2015 01:41 AM by GillermoPonz	0	731	Bioinformatics
	Pair-end sequences assembly with Trinity (data mining doubt) GillermoPonz	04-13-2015 02:35 AM by GillermoPonz	0	883	Bioinformatics
	Problem using the Trinity script align_and_estimate_abundance.pl with RSEM gwilymh	03-31-2015 07:42 AM by jordi	3	2,377	Bioinformatics
	Navigating De-Novo RNA data kevluv93	01-31-2015 03:17 PM by kevluv93	2	1,154	De novo discovery
	How to compare Trinity and Cufflinks results lucasmiguel	12-20-2014 12:48 PM by lucasmiguel	0	1,188	Bioinformatics
	RAM limitation on trinity using DIAG computational resource sckinta	12-19-2014 11:38 AM by jevcampe	1	1,855	Core Facilities
	Problem with trinity output file ahmadsam	11-27-2014 03:27 AM by ahmadsam	0	916	De novo discovery
	TrinotateWeb confusion: Populating Trinotate.sqlite with Expression Data anth	11-24-2014 09:02 AM by kurage	4	2,106	Bioinformatics
	DeNovo ChIPseq and Trinity blcUT	11-13-2014 09:18 PM by Wallysb01	3	1,308	General
	Trinity output illinu	11-13-2014 01:25 AM by illinu	0	1,191	RNA Sequencing
	Trinity installation error JManuelMonroyKuhn	10-30-2014 07:01 AM by JManuelMonroyKuhn	7	2,173	Bioinformatics
	Trinity isoforms vs genes flobpf	10-24-2014 07:52 AM by flobpf	0	1,088	Bioinformatics
	Trinity error around number of CPU's and Java virtual machine gwilymh	10-06-2014 04:03 PM by GenoMax	4	1,965	Bioinformatics
	How come that the Trinity assembler seems to work on a computer with low memory mrb	10-01-2014 08:12 AM by mrb	4	1,326	De novo discovery
	how to merge de novo transcriptome assemblies criggs	09-09-2014 06:06 AM by nareshvasani	6	3,111	Bioinformatics
	Best way to compare DEG between de novo pipeline and Cufflinks pipeline lucasmiguel	08-28-2014 06:20 PM by lucasmiguel	0	1,320	Bioinformatics
	removing genes with low level expression tinguzman	08-18-2014 01:27 AM by Gordon Smyth	1	1,189	RNA Sequencing

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