SEQanswers - Threads Tagged with de novo

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Threads Tagged with de novo

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Threads Tagged with de novo
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	SPAdes duplicate contigs between chromosome and plasmid causland	08-09-2019 08:58 AM by causland	0	2,699	De novo discovery
	Issues with bacterial genome assembly (mapping vs. de novo) SDH	11-19-2018 12:13 AM by SDH	2	928	Bioinformatics
	Using Galaxy Trinity de novo assembly to look for predicted sequence fishseq	11-14-2018 08:07 AM by fishseq	0	2,248	RNA Sequencing
	Cleaning up, merging de novo transcriptomes to create a quality reference dacotahm	10-12-2017 01:00 PM by dacotahm	7	3,807	Bioinformatics
	Program for clustering rna seq reads using protein database bohawk	08-30-2017 10:10 AM by bohawk	0	1,089	RNA Sequencing
	Question about next step in a de novo bacterial genome assembly JodyFranke	07-28-2017 03:55 PM by Brian Bushnell	3	1,998	General
	(Problem) Prediction rRNA with rnammer 1.2 Hyunmin	06-17-2017 07:04 AM by Jassipox	4	8,461	De novo discovery
	Snp discovery without a reference ( 1 2) lletourn	01-12-2016 06:15 AM by arthurmelo	38	16,844	De novo discovery
	De novo RNA-Seq Assembly using Trinity gives too many unigenes. huan	12-27-2015 11:00 PM by huan	8	5,224	RNA Sequencing
	Genome guided vs de novo - Trinity Mocca	10-09-2015 10:54 AM by Mocca	2	3,619	De novo discovery
	Best error correction software and methods for de novo assembly of transcriptomes? Genomics101	09-18-2015 03:24 PM by Brian Bushnell	2	1,715	Bioinformatics
	How should I parse this blast output? aprice67	09-11-2015 10:30 AM by aprice67	1	1,902	Bioinformatics
	Combining >two mappings (reference and de novo) in hexaploid wheat Gordona	07-21-2015 04:22 AM by Gordona	0	1,000	RNA Sequencing
	PacBio CCS read denovo assambly failed PKhongthon	04-03-2015 08:54 AM by rhall	1	2,497	Pacific Biosciences
	genome assembly with only mate pair reads liux	09-16-2014 09:37 AM by Brian Bushnell	4	3,651	Bioinformatics
	Best way to compare DEG between de novo pipeline and Cufflinks pipeline lucasmiguel	08-28-2014 07:20 PM by lucasmiguel	0	2,660	Bioinformatics
	genome comparisons-identifying unique sequences NGS_New_User	08-22-2014 12:03 PM by westerman	1	1,523	Bioinformatics
	phasing de novo mutations krawitz	08-21-2014 03:07 AM by krawitz	0	1,841	Bioinformatics
	Merging two bacteria de novo assemblies into one gmarco	08-13-2014 10:51 AM by mberacochea	6	3,973	Bioinformatics
	What is the expected number of cDNAs/contigs? cement_head	07-29-2014 10:51 AM by GenoMax	1	1,922	De novo discovery
	illumina 454 de novo hybrid pmart1	07-23-2014 04:45 PM by martin2	15	2,435	De novo discovery
	New to omics! Work with non-model lower eukaryotes... help :) EminentJunkie	06-04-2014 09:53 AM by juan.isaza	3	2,932	Introductions
	2 strains.De novo or resequencing? chariko	03-13-2014 01:44 PM by westerman	1	1,893	De novo discovery
	De novo assembly using Velvet: any idea why such small Kmers with long reads? Genomics101	02-21-2014 06:12 PM by Brian Bushnell	17	5,613	Bioinformatics
	CISA assembly contig integrator error gmarco	02-19-2014 09:15 AM by yifangt	2	3,287	Bioinformatics
	Blastn Results - analysis NGS_New_User	02-17-2014 08:43 AM by maubp	4	2,158	Bioinformatics
	Trinity Assembly, Isoforms vs. Paralogs? BGould	01-15-2014 01:51 AM by yvan.wenger	1	3,876	Bioinformatics
	Sequencing strategey for large fish genomes and AllPaths assembly spavey	12-11-2013 03:12 PM by jfostel	2	2,315	Illumina/Solexa
	how to do reference based de novo assembly using velvet arkilis	12-04-2013 05:41 AM by arkilis	8	6,281	Bioinformatics
	Creating bacterial reference genomes bsp017	11-13-2013 06:30 PM by bckirkup	7	1,982	Bioinformatics

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