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Threads Tagged with assembly

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Threads Tagged with assembly
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Using BBMap to determine possible repeat scaffolds/contigs antifolate	01-06-2016 10:14 PM by antifolate	10	5,104	Bioinformatics
	How to generate random short reads from a reference genome ( 1 2) wilflugo	12-29-2015 07:45 AM by cement_head	33	8,975	Bioinformatics
	De novo RNA-Seq Assembly using Trinity gives too many unigenes. huan	12-27-2015 10:00 PM by huan	8	5,672	RNA Sequencing
	MiSeq Paired End Reads for Draft Assembly cktheory	12-23-2015 10:00 PM by Brian Bushnell	1	1,973	Illumina/Solexa
	software about genome assembly and annotation with reference genome Yuhuan Meng	12-23-2015 06:04 PM by Yuhuan Meng	0	2,811	Illumina/Solexa
	Anyone had a positive experience with the assembler PERGA? antifolate	12-21-2015 03:50 PM by antifolate	0	1,651	Bioinformatics
	crAss for comparative metagenomics using cross-assembly dutilh	12-08-2015 08:07 AM by dutilh	19	13,014	Bioinformatics
	Fungal Genome Assembly... a painful experience nwfungi	12-04-2015 07:05 AM by nwfungi	7	4,418	Bioinformatics
	Need suggestions to quantify genomic activity antifolate	11-30-2015 08:40 AM by antifolate	2	1,728	Bioinformatics
	Question: Looking for a genome /draft genome aligner with the these features antifolate	11-24-2015 08:17 AM by antifolate	0	1,715	Bioinformatics
	Pulling together contigs: a less stringent assembly nwfungi	11-17-2015 10:37 PM by flxlex	4	2,430	Bioinformatics
	Minimal overlap between two reads in the de Bruijn algorithm TauOvermind	11-17-2015 10:28 AM by TauOvermind	2	2,011	Bioinformatics
	Extracting Unmapped Contigs antifolate	10-27-2015 02:03 PM by GenoMax	10	3,028	Bioinformatics
	De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016) ecSeq Bioinformatics	10-06-2015 02:28 AM by ecSeq Bioinformatics	0	2,830	Bioinformatics
	Mate Pair QC cwisch88	09-30-2015 12:11 PM by cwisch88	1	2,989	Bioinformatics
	Selective assembly of Genome ktayal	09-18-2015 12:53 PM by gringer	3	1,866	Illumina/Solexa
	Failed assembly due to memory limits in pyRAD Coregonus	08-27-2015 05:37 AM by Coregonus	0	8,784	The Pipeline
	How can i get the number of read aligned to one scaffold youngjune29bhak	08-03-2015 11:13 PM by youngjune29bhak	0	1,655	Bioinformatics
	New MOOC: Algorithms for DNA Sequencing Ben Langmead	08-03-2015 06:47 AM by Ben Langmead	0	1,856	Bioinformatics
	Assembly paired-end sequences with Velvet efsalcedo	07-12-2015 08:10 PM by Brian Bushnell	4	3,918	Illumina/Solexa
	Bioinformatician position rstepanauskas	07-05-2015 12:56 PM by rstepanauskas	0	1,185	Academic/Non-Profit Jobs
	N50 explained maasha	06-11-2015 08:27 AM by kbradnam	19	142,971	Bioinformatics
	Pair-end sequence data preparation for Trancriptome assembly GillermoPonz	05-28-2015 09:37 AM by GenoMax	3	2,304	Bioinformatics
	Hello from QIAGEN Aarhus (Denmark) martin.simonsen	05-27-2015 10:08 PM by martin.simonsen	0	2,360	Introductions
	SPAdes: erroneous kmer threshold bio_informatics	05-17-2015 05:03 PM by bio_informatics	9	6,248	Bioinformatics
	What is the effect of modulating the gaplenDiff parameter -G in SOAPdenovo2? Some kind of padawan	05-08-2015 08:22 AM by Some kind of padawan	0	2,018	De novo discovery
	SPAdes: selecting K-mer based on read length bio_informatics	04-20-2015 04:32 AM by bio_informatics	8	24,063	Bioinformatics
	How would sequence overrepresentation affect the quality of a De Novo assembly? GillermoPonz	04-15-2015 01:41 AM by GillermoPonz	0	1,891	Bioinformatics
	SPAdes: does contig with node id has/refer coverage? bio_informatics	03-27-2015 05:44 AM by bio_informatics	4	7,705	Bioinformatics
	Direction of assembled genome/output? bio_informatics	03-25-2015 07:10 AM by bio_informatics	10	2,025	Bioinformatics

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