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Threads Tagged with tophat

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Threads Tagged with tophat
	Thread / Thread Starter	Last Post	Replies	Views	Forum
	Illumina Directional RNA-Seq ( 1 2 3) flobpf	11-19-2015 04:18 PM by son_nexg	58	43,518	Illumina/Solexa
	Problem with alignment: I can only align 10% of reads(CLIP data, tophat/bowtie) 610617109	11-09-2015 08:09 AM by SylvainL	13	2,333	Bioinformatics
	Tophat mapping problem on reads with length=50nt(or 51nt) tinkering	11-06-2015 07:23 PM by GenoMax	3	1,541	RNA Sequencing
	Created my own RNA-Seq pipeline akropor2	11-06-2015 08:33 AM by akropor2	3	1,580	RNA Sequencing
	Tophat plugin in geneious zhanghao	11-03-2015 07:54 AM by zhanghao	0	903	Bioinformatics
	Count the Number of Paired-End Reads Mapped by Tophat Fernas	10-23-2015 03:26 AM by Brian Bushnell	5	2,652	Bioinformatics
	tophat/cufflinks no gene names or annotations showing up sagarc88	10-05-2015 12:27 PM by dblyons	2	3,522	Bioinformatics
	prep_reads error when running Tophat ( 1 2) bzhang	10-02-2015 02:49 AM by dhatziioanou	35	16,229	Bioinformatics
	RNASeq fusion.out to SAM/BAM garethreid123	09-20-2015 07:22 PM by garethreid123	0	976	RNA Sequencing
	All SAM alignments on reverse strand dhanson	09-04-2015 05:43 PM by dhanson	6	1,531	RNA Sequencing
	Finding isoform sequences for Differentially spliced genes gkandoi	07-29-2015 10:06 PM by gkandoi	0	654	RNA Sequencing
	htseq-count __alignment_not_unique vs tophat chumho	07-24-2015 07:20 AM by chumho	4	2,407	RNA Sequencing
	Tophat2 deletions.bed output question rnastar	07-14-2015 09:53 AM by drdna	6	2,283	RNA Sequencing
	tophat->cufflinks->cuffdiff library type nlign	07-14-2015 08:11 AM by nlign	0	1,209	Bioinformatics
	Low computation usage on AWS using Galaxy adhalleran	06-23-2015 02:55 PM by GenoMax	1	842	Bioinformatics
	How to deal with multiple accepted_hits.bam file as input into cuffdiff? canhu	06-07-2015 07:17 AM by mfahim	1	2,079	RNA Sequencing
	Tophat2 with GFF3 annotation fails to produce Bowtie index. seeker	05-19-2015 08:17 AM by rodrigo.duarte88	11	8,896	Bioinformatics
	mapping reads to single human chromosome rodrigo.duarte88	05-12-2015 04:46 AM by GenoMax	3	754	Bioinformatics
	Why do I need the command perl to run bowtie2? TofuKaj	04-20-2015 08:04 AM by TofuKaj	8	2,133	Bioinformatics
	cummeRbund :: filter on repFpkm sghignone	04-09-2015 06:30 AM by sghignone	0	1,386	Bioinformatics
	RNA-Seq: TopHat with Roche/454 reads DNAjunk	04-04-2015 02:17 AM by sahusarika	12	6,297	Bioinformatics
	Problem using the Trinity script align_and_estimate_abundance.pl with RSEM gwilymh	03-31-2015 08:42 AM by jordi	3	2,882	Bioinformatics
	Boost library error, running Tophat Aholton	03-20-2015 06:20 AM by GenoMax	17	7,138	RNA Sequencing
	Beginner Questions tedwong	03-04-2015 12:53 AM by dpryan	1	958	Bioinformatics
	Samtools flagstat on Tophat generated .bam file rg_gis	02-27-2015 10:35 PM by archana2287	6	7,143	Bioinformatics
	GTF usage in Tophat wariobrega	02-26-2015 11:42 AM by westerman	5	4,556	Bioinformatics
	Tophat Multihit Reads allerzbul	02-24-2015 06:36 AM by swaraj	1	1,273	RNA Sequencing
	Tophat error with Cuffmerged GTF Kolamite	02-21-2015 10:05 AM by Kolamite	0	1,435	RNA Sequencing
	Must paired-end reads be in the same order in the two files for Tophat? friducha	02-18-2015 02:11 PM by SES	2	1,677	Bioinformatics
	accepted_hits.bam attributes estybri	02-17-2015 06:21 AM by estybri	2	771	RNA Sequencing

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